View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_14 (Length: 372)
Name: NF18471_high_14
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 48 - 356
Target Start/End: Complemental strand, 15063185 - 15062877
Alignment:
| Q |
48 |
ctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttatctt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15063185 |
ctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttagctt |
15063086 |
T |
|
| Q |
148 |
ggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattatgagtggcgttggaaccctcgggagcgtctacttagatagcctttatggtgttt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15063085 |
ggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattacgagtggcgttggaaccctcgggagcgtctacttagatagcctttatggtgttt |
15062986 |
T |
|
| Q |
248 |
tttgggggctgcttgttatagggctgctgtcttggttttttctgctgtttttcttctgttatggcaggtttgggacgcactgttgtggctgggcagcaga |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15062985 |
tttgggggctgcttgttatagggctgctgtcttggttttttctgctgtttttcttctgttatggcaggtttgggacgcactgttgtggctgggcagcaga |
15062886 |
T |
|
| Q |
348 |
ccatgtttt |
356 |
Q |
| |
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||||||||| |
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| T |
15062885 |
ccatgtttt |
15062877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 28800883 - 28800971
Alignment:
| Q |
47 |
tctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggt |
135 |
Q |
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| T |
28800883 |
tctatttgggttatttggaagagacggaatgaggttatcttttataatggtgtggttgaggtagaggatttggtggagaatatcaaggt |
28800971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 19724369 - 19724156
Alignment:
| Q |
74 |
aatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttatcttggtattggagtatgagtaggcgaaaa |
173 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| | |||| |
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| T |
19724369 |
aatgagattattttcaataatggtgtgcttgaggtagaagaattgattgagaatatcaaggtgt----tagcttggtattggagtatgagtagacaaaaa |
19724274 |
T |
|
| Q |
174 |
acgatatcgtgtttgtattatgagtggcgttggaaccctcgggagcgtctacttagatagcctttatggtgttttttgggggctgcttgttatagggctg |
273 |
Q |
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| | |||| ||||||||||| |||| | |||||||||||| |||| || ||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
19724273 |
atggtatcatgtttgtattaagagttgtgttggaaccctcaggagtgtttacttagatagttgttatggtgttttttgggggctgtttgttatagggctt |
19724174 |
T |
|
| Q |
274 |
ctgtcttggttttttctg |
291 |
Q |
| |
|
|||| |||| |||||||| |
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| T |
19724173 |
ctgttttggatttttctg |
19724156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 9443716 - 9443549
Alignment:
| Q |
47 |
tctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttatct |
146 |
Q |
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||||||| ||||||||||||| | | ||||||| | || || |||||||||||||||||| | ||||||||| | |||||||||||||| || || |
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| T |
9443716 |
tctatttgggttatttggaagaaaaagaatgaggtgatttttaataatggtgtggttgagatggaggaattggtggagaatatcaaggt----cctagct |
9443621 |
T |
|
| Q |
147 |
tggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattatgagtggcgttggaaccctcgggag |
218 |
Q |
| |
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||||||||||||||||||| || ||||| |||| |||| |||||||||| ||||||||||||||||| |
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| T |
9443620 |
tggtattggagtatgagtaagctaaaaatagcgacgtgcttgtcttatgagtggtgttggaaccctcgggag |
9443549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 744532 - 744458
Alignment:
| Q |
140 |
gttatcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattatgagtggcgttggaaccctcg |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |
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| T |
744532 |
gttatcttggtattggtgtatgagtaggcggaaaattgtatcgtgtttgtattacgagtggtgttggaaccctcg |
744458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 748462 - 748388
Alignment:
| Q |
140 |
gttatcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattatgagtggcgttggaaccctcg |
214 |
Q |
| |
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|||| ||||||||||| |||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |
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| T |
748462 |
gttagcttggtattggtatatgagtaggcggaaaattgtatcgtgtttgtattacgagtggtgttggaaccctcg |
748388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 25290543 - 25290761
Alignment:
| Q |
30 |
ttgtttgatttggctcg--tctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaat |
127 |
Q |
| |
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||||||||||||||| | ||||||| || ||||||||||| | |||||||||||| ||||||||||||||||| | ||||| || |||||||| |
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| T |
25290543 |
ttgtttgatttggcttgcctctatttgagtgatttggaagcaaaggaatgagattattttcaataatggtgtggtgaatgtagatattttcattgagaag |
25290642 |
T |
|
| Q |
128 |
atcaaggtgtacgttatcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattatgagtggcgttggaaccctcgggagcgtctactt |
227 |
Q |
| |
|
|||||| | || ||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||| |
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| T |
25290643 |
atcaagattc----tagcttggtattggagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttactt |
25290738 |
T |
|
| Q |
228 |
agatagcctttatggtgtttttt |
250 |
Q |
| |
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|||||| ||| |||||||||| |
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| T |
25290739 |
agatagtttttccggtgtttttt |
25290761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 4282189 - 4282356
Alignment:
| Q |
47 |
tctatttcggttatttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttatct |
146 |
Q |
| |
|
||||||| ||||||||||||| | |||||| ||||||| ||||||||||| || ||| | ||||| || | |||||||| ||||| || || |
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| T |
4282189 |
tctatttgggttatttggaagagaagaaatgaggttatctttaataatggtgttgtagagatggaggatgtggtcgagaatataaaggttc----tagct |
4282284 |
T |
|
| Q |
147 |
tggtattggagtatgagtaggcgaaaaacgatatcg---tgtttgtattatgagtggcgttggaaccctcggga |
217 |
Q |
| |
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||||||||||||||||||| || |||| ||| || |||||||||||||||||| |||||||||||||||| |
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| T |
4282285 |
tggtattggagtatgagtaagctgaaaa--atagcgacatgtttgtattatgagtggtgttggaaccctcggga |
4282356 |
T |
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