View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_high_16 (Length: 339)
Name: NF18471_high_16
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 24617655 - 24617336
Alignment:
| Q |
1 |
aaatagagacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcat |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24617655 |
aaatagggacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaatcatgtatgcaggcat |
24617556 |
T |
|
| Q |
101 |
gcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24617555 |
gcagatggatacattgttttcaggtaatgtcatactgtgaattttccccttaattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgc |
24617456 |
T |
|
| Q |
201 |
ttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaatatatcaccttggtaaaaacaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24617455 |
ttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaatatatcaccttggtaaaaacaat |
24617356 |
T |
|
| Q |
301 |
ctttaagctctttacagatc |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24617355 |
ctttaagctctttacagatc |
24617336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24106064 - 24106333
Alignment:
| Q |
1 |
aaatagagacacattagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24106064 |
aaatagagacacattagttttgaaatcagatgttactaaaggggaaggaccagaatctcgtgatggagatttggttgaattcaattatgtatgcaggcat |
24106163 |
T |
|
| Q |
101 |
gcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24106164 |
gcagatggatactttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgc |
24106263 |
T |
|
| Q |
201 |
ttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
270 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
24106264 |
ttggttttatactctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24106333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 24113423 - 24113679
Alignment:
| Q |
13 |
attagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24113423 |
attagtttt-aaatcagatgttactaaagtggaaggaccggaatcacgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
24113521 |
T |
|
| Q |
113 |
attgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgcttggttttatac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24113522 |
tttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgcttggttttatac |
24113621 |
T |
|
| Q |
213 |
tctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
270 |
Q |
| |
|
|||||||||||| ||| |||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
24113622 |
tctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24113679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 24616925 - 24616871
Alignment:
| Q |
38 |
aaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtat |
92 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616925 |
aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat |
24616871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 24101699 - 24101834
Alignment:
| Q |
13 |
attagttttgaaatcagatgttactaaaggggaaggatcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
112 |
Q |
| |
|
||||||||| |||| || ||||||| ||||||||||| | ||| | | | || ||||||||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
24101699 |
attagttttcaaattagttgttactgaaggggaaggaccagaagcacacgggggcgatttggttgaattcaattgtgtatgcagacgtgcaaatggatac |
24101798 |
T |
|
| Q |
113 |
attgttttcaggtaatttcatactgtgaattttccc |
148 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||| |
|
|
| T |
24101799 |
tttgttttcaggtgatttcatgatatgaattttccc |
24101834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23359832 - 23359762
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23359832 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23359762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23364653 - 23364583
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23364653 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23364583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23695131 - 23695061
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23695131 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23695061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23713571 - 23713501
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23713571 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23713501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23732027 - 23731957
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23732027 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23731957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 23750482 - 23750412
Alignment:
| Q |
60 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23750482 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23750412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 24101934 - 24101984
Alignment:
| Q |
184 |
aactatcctaatgttgcttggttttatactctaattcaatacagtgcagta |
234 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| || ||| ||||| |
|
|
| T |
24101934 |
aactgtcctaatgttgcttggtttcatactctaattcactatagtacagta |
24101984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University