View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18471_high_17 (Length: 336)

Name: NF18471_high_17
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18471_high_17
NF18471_high_17
[»] chr2 (7 HSPs)
chr2 (10-319)||(20518063-20518363)
chr2 (47-233)||(22511840-22512026)
chr2 (45-233)||(24189071-24189257)
chr2 (159-233)||(31000576-31000651)
chr2 (107-251)||(19541713-19541857)
chr2 (161-233)||(25461225-25461297)
chr2 (153-233)||(23854061-23854140)
[»] chr1 (12 HSPs)
chr1 (47-233)||(25664829-25665015)
chr1 (94-225)||(25132654-25132785)
chr1 (56-233)||(14581200-14581380)
chr1 (126-251)||(23506753-23506878)
chr1 (170-233)||(11768900-11768963)
chr1 (155-233)||(23224592-23224671)
chr1 (137-233)||(33083621-33083717)
chr1 (144-215)||(33175519-33175589)
chr1 (56-85)||(14932366-14932395)
chr1 (144-189)||(15571504-15571549)
chr1 (164-225)||(23420500-23420560)
chr1 (40-245)||(25778770-25778974)
[»] scaffold0186 (1 HSPs)
scaffold0186 (58-248)||(32588-32777)
[»] chr8 (8 HSPs)
chr8 (31-230)||(27117436-27117637)
chr8 (144-215)||(6887085-6887155)
chr8 (44-230)||(13581832-13582018)
chr8 (94-233)||(18789970-18790106)
chr8 (144-230)||(14140207-14140293)
chr8 (94-242)||(36317244-36317393)
chr8 (68-161)||(30846880-30846972)
chr8 (144-224)||(35134461-35134540)
[»] chr4 (9 HSPs)
chr4 (126-243)||(19602912-19603030)
chr4 (31-240)||(22120727-22120933)
chr4 (115-180)||(42498705-42498771)
chr4 (144-233)||(30797658-30797747)
chr4 (58-216)||(18778201-18778361)
chr4 (143-233)||(25367684-25367773)
chr4 (164-233)||(51885860-51885930)
chr4 (170-230)||(12805788-12805849)
chr4 (144-185)||(21048358-21048399)
[»] chr7 (12 HSPs)
chr7 (123-242)||(22334158-22334276)
chr7 (123-237)||(21536414-21536528)
chr7 (31-216)||(13709079-13709263)
chr7 (165-233)||(2352150-2352217)
chr7 (94-233)||(10924983-10925119)
chr7 (154-236)||(14074451-14074533)
chr7 (154-236)||(14384479-14384561)
chr7 (144-233)||(11466918-11467006)
chr7 (158-233)||(7494462-7494538)
chr7 (155-233)||(18494572-18494651)
chr7 (93-233)||(22271065-22271206)
chr7 (147-220)||(30406754-30406826)
[»] scaffold0804 (1 HSPs)
scaffold0804 (56-233)||(917-1097)
[»] scaffold0107 (1 HSPs)
scaffold0107 (59-238)||(32732-32909)
[»] chr3 (8 HSPs)
chr3 (42-225)||(13586028-13586213)
chr3 (31-250)||(8713809-8714028)
chr3 (31-250)||(9065696-9065915)
chr3 (31-225)||(22487754-22487946)
chr3 (192-233)||(19541931-19541972)
chr3 (142-233)||(5631514-5631604)
chr3 (126-225)||(22463350-22463450)
chr3 (126-225)||(22464808-22464908)
[»] scaffold0065 (1 HSPs)
scaffold0065 (60-233)||(13365-13536)
[»] chr5 (5 HSPs)
chr5 (142-233)||(20100987-20101078)
chr5 (94-213)||(20695874-20695991)
chr5 (119-225)||(18281077-18281184)
chr5 (144-193)||(7741222-7741271)
chr5 (154-233)||(11273701-11273781)
[»] chr6 (8 HSPs)
chr6 (31-163)||(28179035-28179166)
chr6 (156-245)||(15320053-15320142)
chr6 (143-233)||(9395437-9395527)
chr6 (156-234)||(15350222-15350300)
chr6 (151-233)||(15387126-15387208)
chr6 (156-245)||(15370694-15370783)
chr6 (144-184)||(26498761-26498801)
chr6 (155-233)||(8037013-8037091)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 20518363 - 20518063
Alignment:
Q  10 agatgaaggggggattcaaggaggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaa 109  Q
    ||||||||||||||||||||||   || |||||||||||||| |||| ||||||| ||||||||||||| |||||||||| || |||||||||||| |||    
T  20518363 agatgaaggggggattcaagga---ttccataatcgtcgttacacttatgaatcatccaaacctaatcttgcattgaacacggcaattaaaactctgcaa 20518267  T
Q  110 ccacattcaaatcttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttat 209  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  20518266 ccacatttaaattttctcttttatttgctttataaataaattccactaattaccaagttcaacgataatccatgtggagattattaacatactaatttat 20518167  T
Q  210 tacttgatacgatttgatgcactttcctaaatttaccatcaactgacgagctacttacgtgcacaatagcaatcttgccattctctagaggaaacttcat 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      |||||||||||||||||| |||||||||||||||    
T  20518166 tacttgatacgatttgatgcactttcctaaatttaccattaactgacgagctacttacgt------tagcaatcttgccattctttagaggaaacttcat 20518073  T
Q  310 ccggaggttc 319  Q
    ||||||||||    
T  20518072 ccggaggttc 20518063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 22511840 - 22512026
Alignment:
Q  47 cgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgcttta-taaa 145  Q
    ||||| || |||||||||||||||||||||||||||||   || |  | |||||||  | ||||||| ||||| |||| ||| |||||| ||||  ||||    
T  22511840 cgttaaacatctgaatcaaccaaacctaatctcgcattcggcaggacagttaaaaccttgcaaccac-ttcaagtcttttctcttatttacttttctaaa 22511938  T
Q  146 taaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    || |||||| ||||||||||||| ||| ||||||| ||||||||  |||||||| |||||| |||||||||||||||||| |||||||    
T  22511939 tatattccgttaattaccaagttgaactacaatccttgtggagacgattaacttcctaattgattacttgatacgatttggtgcactt 22512026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 24189071 - 24189257
Alignment:
Q  45 gtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaa-tcttctcttttatttg-ctttat 142  Q
    ||||||| || ||||||||||||||||||||||||||||||  ||||  ||||||||  || ||||||| |||||| |||  |||||||||||  |||||    
T  24189071 gtcgttaaacatctgaatcaaccaaacctaatctcgcattgcgcatgacaattaaaatcctgcaaccac-ttcaaactctattcttttatttgattttat 24189169  T
Q  143 aaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||  ||||||||||||| |||| ||| | |||||||||||| |  ||||||||||   ||||||||||| || |||||  |||||||    
T  24189170 aaataagctccgctaattaccgagttgaacaaaaatccatgtggaaaggattaacttac---tttattacttggtatgatttagtgcactt 24189257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 31000576 - 31000651
Alignment:
Q  159 ttaccaagttcaacgacaatccatgtggagatt-attaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||| ||||| ||||||||||| |||||||| | || ||||||||| ||||||||||| ||| |||||||||||||    
T  31000576 ttactaagttgaacgacaatccctgtggagaatgataaacttactactttattacttgttacaatttgatgcactt 31000651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 19541713 - 19541857
Alignment:
Q  107 caaccacattcaaatcttctcttttatttgctttataaataaattccg-ctaattaccaagttcaacgacaatccatgtggagattattaacttactaat 205  Q
    ||||||| |||||||||  |||||||||| ||||  ||||||||||   |||||||||  ||| ||||| ||||||||||||||  | ||| |||||| |    
T  19541713 caaccactttcaaatctcttcttttatttactttc-aaataaattcaaactaattaccttgttgaacgaaaatccatgtggagacga-taatttactact 19541810  T
Q  206 ttattacttgatacgatttgatgcactttcctaaatt-taccatcaa 251  Q
    |||||| |||||| | |||| ||||||| |||||||| |||||||||    
T  19541811 ttattatttgatatggtttggtgcacttgcctaaattataccatcaa 19541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 25461225 - 25461297
Alignment:
Q  161 accaagttcaacgacaatccatgtggagattattaacttactaatttattacttg-atacgatttgatgcactt 233  Q
    |||||||| ||||||||||||| ||||||  | |||||||||| |||||||||||  ||| |||||||||||||    
T  25461225 accaagttgaacgacaatccatttggagacga-taacttactactttattacttgtgtacaatttgatgcactt 25461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 23854140 - 23854061
Alignment:
Q  153 cgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||| |||||| |||| ||||||||||| ||||||||  | ||| |||||| ||||||||||| || |||||| |||||||    
T  23854140 cgctgattaccgagttgaacgacaatccctgtggaga-caataatttactactttattacttgttatgatttggtgcactt 23854061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 25665015 - 25664829
Alignment:
Q  47 cgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgctttataaat 146  Q
    ||||| |||||||||| |   |||| ||||||||||||| |||||  ||||||||| ||  |||||| |||||||||| | ||||||||||||  |||||    
T  25665015 cgttaaacttctgaattagaaaaacttaatctcgcattggacatgacaattaaaaccctataaccaccttcaaatcttttattttatttgcttactaaat 25664916  T
Q  147 aaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    | ||| ||||||||||| |||| ||||||||||| | | ||||| |||||||||||| |||||||||||||| |||||| |||||||    
T  25664915 agatttcgctaattaccgagttgaacgacaatccctatcgagatgattaacttactactttattacttgatatgatttggtgcactt 25664829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 25132785 - 25132654
Alignment:
Q  94 aattaaaactctccaaccacattcaaatcttctcttttatttgcttta-taaataaattccgctaattaccaagttcaacgacaatccatgtggagatta 192  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||  |||| | ||||||||| ||  | |||| ||||||||||||||||||||| |    
T  25132785 aattaaaactctgcaatcac-ttcaaatcttctcttttatttgcttttctaaaaagattccgctagttgtcgagttgaacgacaatccatgtggagatga 25132687  T
Q  193 ttaacttactaatttattacttgatacgatttg 225  Q
    |||||||| |||||||||| ||  |||||||||    
T  25132686 ttaacttattaatttattatttagtacgatttg 25132654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 14581200 - 14581380
Alignment:
Q  56 tctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaacca---cattcaaatcttctcttttatttgctttataaataaattc 152  Q
    |||||||||| ||||||||| |||||||||  || |  ||||||||| || ||||||   | |||||||||| |  |||||||||||| |||||| ||||    
T  14581200 tctgaatcaatcaaacctaacctcgcattgtgcaagataattaaaaccctgcaaccatcaccttcaaatctttttatttatttgctttttaaatagattc 14581299  T
Q  153 cgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||||  |||||||||||||||| |||  | |  ||||| ||| || ||||||||||  ||| ||||| |||||||    
T  14581300 cgctaattacagagttcaacgacaatccctgtaaaaacaattaatttattactttattacttagtacaatttggtgcactt 14581380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 23506753 - 23506878
Alignment:
Q  126 tcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttg 225  Q
    |||||||||||||||   ||||||||| ||||||||||||||| ||||||| ||  ||| ||||  | |||||||||| ||||||| || ||||||||||    
T  23506753 tcttttatttgcttttctaataaattctgctaattaccaagttgaacgacattcactgtagagacga-taacttactactttattatttaatacgatttg 23506851  T
Q  226 atgcactttcctaaatt-taccatcaa 251  Q
     || |||| || ||||| |||||||||    
T  23506852 gtgaacttgccaaaattataccatcaa 23506878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 11768963 - 11768900
Alignment:
Q  170 aacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||||||||||||||  || ||||||||| |||||| |||  |||||||||||||||||    
T  11768963 aacgacaatccatgtggagacgataaacttactactttattccttattacgatttgatgcactt 11768900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 23224592 - 23224671
Alignment:
Q  155 ctaattaccaagttcaacgacaatccatgtggag-attattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||| | ||||| ||||||||||||||||||| || || |||||||||  |||||||||| |||||||||| ||||||    
T  23224592 ctaattgctaagttgaacgacaatccatgtggagaatgataaacttactaccttattacttgttacgatttgacgcactt 23224671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 33083717 - 33083621
Alignment:
Q  137 ctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||| |||||| ||||| ||||||||| || | ||||||||||| |||  | |  |||||||||||| | ||||||||  |||||||||||||||||    
T  33083717 ctttttaaatagattccactaattaccgaggtgaacgacaatccttgtaaaaacgattaacttactactctattactttgtacgatttgatgcactt 33083621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 33175589 - 33175519
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttg 215  Q
    |||||||||| |||||| | ||||| |||||||||| |||||||||  || ||||||||| |||||||||||    
T  33175589 aataaattcctctaattgctaagttgaacgacaatctatgtggagaagat-aacttactattttattacttg 33175519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 14932395 - 14932366
Alignment:
Q  56 tctgaatcaaccaaacctaatctcgcattg 85  Q
    ||||||||||||||||||||||||||||||    
T  14932395 tctgaatcaaccaaacctaatctcgcattg 14932366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 15571549 - 15571504
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggaga 189  Q
    ||||||||||  ||||| | ||||||||||||||||||||||||||    
T  15571549 aataaattccattaattgctaagttcaacgacaatccatgtggaga 15571504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 23420560 - 23420500
Alignment:
Q  164 aagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttg 225  Q
    ||||| ||||||||||| ||||||||  || ||||||||| ||||||||||| |||||||||    
T  23420560 aagttgaacgacaatccttgtggagacgat-aacttactactttattacttgttacgatttg 23420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 25778770 - 25778974
Alignment:
Q  40 taatcgtcgttagacttctgaatcaa-ccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttct-cttttatttgc 137  Q
    ||||||| |||| ||||||||||||| |||||  | ||||||||||| |||||  ||||||||| || |||||||  || |||||| | ||||||||||     
T  25778770 taatcgttgttacacttctgaatcaacccaaatgttatctcgcattggacatgacaattaaaaccctgcaaccactctc-aatcttttacttttatttga 25778868  T
Q  138 tttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttga-tacgatttgatgcactttcc 236  Q
    |||  |||||||| || |||| |||| |||| || |||||||  ||| ||||| | |||||||| | |||||||||||| || |||| | ||||||| ||    
T  25778869 ttt-caaataaataccactaactaccgagttgaa-gacaatctttgttgagatga-taacttaccactttattacttgagtatgattggctgcacttgcc 25778965  T
Q  237 taaatttac 245  Q
    ||| |||||    
T  25778966 taattttac 25778974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 32777 - 32588
Alignment:
Q  58 tgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgctt-tataaataaattccgct 156  Q
    ||||||||||||||||||||||| ||||  |||| || |||||||  | ||| | | |||||| ||| |||||||||||||| | |||||| ||||||||    
T  32777 tgaatcaaccaaacctaatctcgtattgggcatgcaa-ttaaaaccttgcaatccc-ttcaaaacttttcttttatttgcttgtctaaatagattccgct 32680  T
Q  157 aattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttcctaaatttaccat 248  Q
    ||||||||| || || ||||||||||||| |||  |||||||||||| ||||||| ||| |||||||  ||| |||| ||||||||| ||||    
T  32679 aattaccaaattgaaggacaatccatgtgaagacaattaacttactactttattatttggtacgattgaatgtacttgcctaaattttccat 32588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 27117637 - 27117436
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatct--tctct 128  Q
    |||||||| ||||| ||||||  ||| |||||||||||||||||||||  ||||   || |  ||| ||||| || |||| || |||||||||  | |||    
T  27117637 aggatttcttaatcatcgttaagcttttgaatcaaccaaacctaatcttacattaggcaagacaatcaaaaccctgcaacaaccttcaaatctcttttct 27117538  T
Q  129 tttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatg 228  Q
    |||||||| ||| |||||| | |||||| |||||| |||| |||||| |||| ||||  ||  |||||||||||| ||||||||||||||||||||| ||    
T  27117537 tttatttgttttttaaatagactccgctgattaccgagttgaacgacgatccttgtgaggacgattaacttactactttattacttgatacgatttggtg 27117438  T
Q  229 ca 230  Q
    ||    
T  27117437 ca 27117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 6887155 - 6887085
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttg 215  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  | ||||||||||||||| ||||||    
T  6887155 aataaattccgctaattaccaagttgaacgacaatccttgtggagacga-taacttactaatttaatacttg 6887085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 13582018 - 13581832
Alignment:
Q  44 cgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgctttata 143  Q
    |||||||| ||||||||||||    |||||||||||||||||   | |  |||| ||||  | ||||||| ||||| |||| |||||||||| | || ||    
T  13582018 cgtcgttacacttctgaatcacaataacctaatctcgcattgggtaggacaattgaaaccttgcaaccactttcaattcttttcttttattttcgtttta 13581919  T
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgca 230  Q
    |||||||||| ||||||||| |||  |||||||| |  |||||| |  || ||||||||| ||||||||||| ||  ||||||||||    
T  13581918 aataaattcctctaattaccgagtcgaacgacaaacactgtggaaacgataaacttactactttattacttgttattatttgatgca 13581832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 18789970 - 18790106
Alignment:
Q  94 aattaaaactctccaaccacattcaaatcttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattat 193  Q
    |||||||||||| |||||||  || |||| | |||||||||||||||  |||||| ||| ||| |||| | |||| ||||| ||||| | || |||  ||    
T  18789970 aattaaaactctgcaaccac--tccaatcctttcttttatttgcttttcaaataagttctgctcattatcgagttgaacgaaaatccctatgaagacgat 18790067  T
Q  194 taacttactaatttattacttgatacgatttgatgcactt 233  Q
     ||||||||| ||||||||||||||||||||| |||||||    
T  18790068 -aacttactactttattacttgatacgatttggtgcactt 18790106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 14140207 - 14140293
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattac-ttgatacgatttgatgca 230  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||||| | |||||||||| | |||||| ||  ||||||||||||||    
T  14140207 aataaattctgctaatttctaagttcaacgacaatccatgtggagatga-taacttactattgtattacttttctacgatttgatgca 14140293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 36317393 - 36317244
Alignment:
Q  94 aattaaaactctccaaccacat-tcaaatcttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagatta 192  Q
    |||||||||||| ||||||  | ||||||||  || ||||||||||||  ||||||||| | ||||||| |||||| |||||||| || | | ||||  |    
T  36317393 aattaaaactctgcaaccaactctcaaatctcttcctttatttgcttttaaaataaatttcactaattatcaagttaaacgacaaccccttttgagacga 36317294  T
Q  193 ttaacttactaatttattacttga-tacgatttgatgcactttcctaaatt 242  Q
     |||||| ||| |||||| ||||| ||||||||||||||||| | ||||||    
T  36317293 -taacttgctactttattgcttgagtacgatttgatgcacttacttaaatt 36317244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 30846972 - 30846880
Alignment:
Q  68 aaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgctttataaataaattccgctaatta 161  Q
    ||||||||||||| |||||||| |   | |||| |||| ||||||| || ||||||  ||||| |||||||||||||||||||||| |||||||    
T  30846972 aaacctaatctcgtattgaacaggacgaataaatctctgcaaccacctttaaatctattcttt-atttgctttataaataaattcctctaatta 30846880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 35134540 - 35134461
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgattt 224  Q
    ||||||||  ||||||||||||||| ||||||||||| | ||||||  | ||||| |||| ||||||||||| ||| ||||    
T  35134540 aataaattttgctaattaccaagttaaacgacaatccttatggaga-cagtaactcactattttattacttgttactattt 35134461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 19602912 - 19603030
Alignment:
Q  126 tcttttatttgcttta-taaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgattt 224  Q
    |||||||||||||||  ||||||| ||| |||||||||| |||| ||||| ||||| ||||||||  |||||||||||  ||||||||||| ||| ||||    
T  19602912 tcttttatttgcttttctaaataagttcagctaattaccgagttgaacgataatccctgtggagacgattaacttactgctttattacttggtactattt 19603011  T
Q  225 gatgcactttcctaaattt 243  Q
    ||||||||| |||||||||    
T  19603012 gatgcacttgcctaaattt 19603030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 22120727 - 22120933
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||| | ||||||  |||| |||||||||||||| |||||||||||| ||||| | | |  | |||||| ||| ||||||| ||  |||| |||  ||    
T  22120727 aggattccttaatcgatgttacacttctgaatcaac-aaacctaatctcacattggataggccagttaaaattctgcaaccacctttcaatcatctactt 22120825  T
Q  131 tatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgca 230  Q
    |||||||||| ||||||||||||  |||||||  |||| ||||||||||| ||| | ||  | |||||||||  || ||||||| ||||||||||| |||    
T  22120826 tatttgctttttaaataaattccagtaattactgagtttaacgacaatccctgttgtgacga-taacttactgtttcattactt-atacgatttgacgca 22120923  T
Q  231 ctttcctaaa 240  Q
    ||| ||||||    
T  22120924 cttgcctaaa 22120933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 42498705 - 42498771
Alignment:
Q  115 ttcaaatcttctcttttatttgct-ttataaataaattccgctaattaccaagttcaacgacaatcc 180  Q
    |||||||||| ||| |||||| || || ||||||||||||||||||||||||||| |||||||||||    
T  42498705 ttcaaatcttttctcttatttactcttctaaataaattccgctaattaccaagttgaacgacaatcc 42498771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 30797658 - 30797747
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||||| || ||||| | ||||| ||| ||||||| ||| ||||  || ||||||||| ||||||||||| |||||||||||||||||    
T  30797658 aataaatttcgttaattgctaagttgaacaacaatccttgttgagacgataaacttactactttattacttgttacgatttgatgcactt 30797747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 18778201 - 18778361
Alignment:
Q  58 tgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttct---cttttatttgctttataaataaattccg 154  Q
    ||||| ||| |||||||||||| |||||  ||||  ||||| |||||| ||||||| ||  |||||  |   |||||||||  ||| |||||||||||      
T  18778201 tgaattaacaaaacctaatctcacattgggcatgacaattacaactctgcaaccacctttcaatctattattcttttattttatttttaaataaattcat 18778300  T
Q  155 ctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttga 216  Q
    |||||||| ||||| ||||||||||||  |||| |  | |||||||||| ||||||||||||    
T  18778301 ctaattacaaagttgaacgacaatccacatggaaacga-taacttactactttattacttga 18778361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 25367684 - 25367773
Alignment:
Q  143 aaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||||||  | ||||| | ||||| ||||||||| |||||||||| | | ||||||||| ||||||||||| | ||||||| |||||||    
T  25367684 aaataaattttgttaatttctaagttgaacgacaattcatgtggagactgt-aacttactactttattacttgtttcgatttggtgcactt 25367773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 51885860 - 51885930
Alignment:
Q  164 aagttcaacgacaatccatgtggagattattaa-cttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||| ||||||||||| ||||||||  | ||| ||||||| ||||||||||||||||||| | |||||||    
T  51885860 aagttgaacgacaatccctgtggagaacaataaacttactactttattacttgatacgattcggtgcactt 51885930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 12805849 - 12805788
Alignment:
Q  170 aacgacaatccatgtggagatt-attaacttactaatttattacttgatacgatttgatgca 230  Q
    ||||||||||| |||||||| | || ||||||||| ||||||||||| ||||||||| ||||    
T  12805849 aacgacaatccttgtggagaatgataaacttactactttattacttgttacgatttggtgca 12805788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 21048358 - 21048399
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtg 185  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||    
T  21048358 aataaattccgctaattaccaagttgaacaacaatccttgtg 21048399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 22334276 - 22334158
Alignment:
Q  123 ttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgat 222  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||| || ||||||  ||||| |||| | |||||||||| ||||||||||||||| ||    
T  22334276 ttctcttttatttgcttttctaataaattcagctaattaccaagttgaatgacaatttatgtgaagatga-taacttactactttattacttgatacaat 22334178  T
Q  223 ttgatgcactttcctaaatt 242  Q
    ||| |  |||| ||||||||    
T  22334177 ttggtatacttgcctaaatt 22334158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 21536528 - 21536414
Alignment:
Q  123 ttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgat 222  Q
    |||||||||||||  ||| ||||||| |||||||||||||| |||| ||||| |||||  |||||||  |||||||| ||| ||||||| ||| ||||||    
T  21536528 ttctcttttattttttttctaaataagttccgctaattaccgagtttaacgaaaatcccagtggagaagattaacttcctactttattatttggtacgat 21536429  T
Q  223 ttgatgcactttcct 237  Q
    ||  |||||||||||    
T  21536428 ttagtgcactttcct 21536414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 13709079 - 13709263
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||| | |||||||||||| ||||| ||||||   |||| ||||||||||||||||| |  |||||||||  | |||||||  |||| |||| |  ||    
T  13709079 aggattccctaatcgtcgttacacttccgaatcacaaaaacataatctcgcattgaacaagacaattaaaaccatgcaaccactctcaa-tctttttctt 13709177  T
Q  131 tatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttga 216  Q
    |||||||||| | |||||||||| ||||||||| |||| |||||  |||| | ||||||  | | |||||||| ||||||||||||    
T  13709178 tatttgctttttgaataaattccactaattacccagttgaacgatgatccctatggagacgaattacttactactttattacttga 13709263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 2352217 - 2352150
Alignment:
Q  165 agttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||| ||||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||    
T  2352217 agttgaacgacaatccatgtggagatgat-aacttactactttattacttgttacgatttgatgcactt 2352150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 10924983 - 10925119
Alignment:
Q  94 aattaaaactctccaaccacattcaaatcttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattat 193  Q
    |||||||||||| |||||||  || |||| | |||||||||||||||  |||||| ||| ||| |||| | |||| ||||| ||||| | || |||  ||    
T  10924983 aattaaaactctgcaaccac--tccaatcctttcttttatttgcttttcaaataagttctgctcattatcgagttgaacgaaaatccctatgaagacgat 10925080  T
Q  194 taacttactaatttattacttgatacgatttgatgcactt 233  Q
     ||||||||| ||||||||||||||||||||| |||||||    
T  10925081 -aacttactactttattacttgatacgatttggtgcactt 10925119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 14074451 - 14074533
Alignment:
Q  154 gctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttcc 236  Q
    |||||||||| |||| || ||||||||||||| |||  || ||||||||| ||||||||||| ||||||||  ||||||||||    
T  14074451 gctaattaccgagttgaatgacaatccatgtgaagacgataaacttactactttattacttgttacgattttgtgcactttcc 14074533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 14384479 - 14384561
Alignment:
Q  154 gctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttcc 236  Q
    |||||||||| |||| || ||||||||||||| |||  || ||||||||| ||||||||||| ||||||||  ||||||||||    
T  14384479 gctaattaccgagttgaatgacaatccatgtgaagacgataaacttactactttattacttgttacgattttgtgcactttcc 14384561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 11467006 - 11466918
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||| ||||||| | ||||| || |||||||||||||||||  | |||| ||||| ||||||||||  |||||||||||||||||    
T  11467006 aataaattctgctaattgctaagttgaatgacaatccatgtggaga-caataacctactactttattacttcttacgatttgatgcactt 11466918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 7494462 - 7494538
Alignment:
Q  158 attaccaagttcaacgacaatccatgtggagatt-attaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||| ||||| ||||  ||||| |||||||| | || ||||||||||||||||||||| ||||||||| |||||||    
T  7494462 attactaagttgaacggtaatccctgtggagaatgataaacttactaatttattacttgttacgatttggtgcactt 7494538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 18494651 - 18494572
Alignment:
Q  155 ctaattaccaagttcaacgacaatccatgtggag-attattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||| |||| ||||||||||| ||||||| |  || |||||||||  |||||||||| ||||||||| |||||||    
T  18494651 ctaattaccgagttgaacgacaatccctgtggagaacaataaacttactaccttattacttgttacgatttggtgcactt 18494572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 22271206 - 22271065
Alignment:
Q  93 aaattaaaactctccaaccacattcaaatctt-ctcttttatttgctttataaa-taaattccgctaattaccaagttcaacgacaatccatgtggagat 190  Q
    |||||||||| || ||||||| |||||||||| ||||||||||| ||||  ||| || |||  | |||||||  |||| ||||||||||| | || |||     
T  22271206 aaattaaaaccctgcaaccac-ttcaaatctttctcttttattttcttttcaaaatatattatgataattactgagttgaacgacaatccctatgaagac 22271108  T
Q  191 tattaacttactaatttattacttgatacgatttgatgcactt 233  Q
     ||||||||||||  |||||||||   ||||||||||||||||    
T  22271107 gattaacttactaccttattactttgcacgatttgatgcactt 22271065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 30406754 - 30406826
Alignment:
Q  147 aaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacg 220  Q
    |||||| |||||||||||| || ||| | |||| |||||||||  |||||||||||| |||||||||| |||||    
T  30406754 aaattctgctaattaccaaattgaacaaaaatc-atgtggagacgattaacttactactttattacttaatacg 30406826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 917 - 1097
Alignment:
Q  56 tctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaacca---cattcaaatcttctcttttatttgctttataaataaattc 152  Q
    |||||||||| ||||||||| |||||||||  || |  ||||||||| || ||||||   | |||||||||| |  |||||||||||| |||||| ||||    
T  917 tctgaatcaatcaaacctaacctcgcattgtgcaagataattaaaaccctgcaaccatcaccttcaaatctttttatttatttgctttttaaatagattc 1016  T
Q  153 cgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||||  |||||||||||||||| |||  | |  ||||| ||| || ||||||||||  ||| ||||| |||||||    
T  1017 cgctaattacagagttcaacgacaatccctgtaaaaacaattaatttattactttattacttagtacaatttggtgcactt 1097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 32732 - 32909
Alignment:
Q  59 gaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttttatttgcttta-taaataaattccgcta 157  Q
    |||||||||||||||||||||||||||   | |  ||||||||| || ||| |||  ||||  ||| ||||||| ||| |||  ||||||| |||||||     
T  32732 gaatcaaccaaacctaatctcgcattgggtaggacaattaaaaccctgcaatcac--tcaag-cttttcttttacttgattttctaaataagttccgctt 32828  T
Q  158 attaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttccta 238  Q
    |||||| |||| ||||| ||||||||||||||  ||||||| |||| ||||||||||| ||||||||| | ||||| ||||    
T  32829 attaccgagttgaacgataatccatgtggagacaattaactaactactttattacttggtacgatttggtacacttgccta 32909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 13586213 - 13586028
Alignment:
Q  42 atcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaat--cttctcttttatttgc-t 138  Q
    |||||| ||| || |||||||||||||||||||||||||||||| |   |  || ||||||  | ||||||| | ||| |   ||||||||||||||| |    
T  13586213 atcgtccttaaacatctgaatcaaccaaacctaatctcgcattgcatgcgacaactaaaaccttgcaaccac-tccaatttatttctcttttatttgctt 13586115  T
Q  139 ttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttg 225  Q
    || |||| ||||| ||||||||||  | |  || |||||||||||||||||  |||||||||||| ||||||| |||||||||||||    
T  13586114 ttctaaacaaatttcgctaattactgaatcgaaggacaatccatgtggagacgattaacttactactttattatttgatacgatttg 13586028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 8714028 - 8713809
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||| | ||||||| ||||  ||||||||||||||||||||||||| ||||||  || |  |||| |||| || || | || || |||||||||||||    
T  8714028 aggattccctaatcgttgttaatcttctgaatcaaccaaacctaatcttgcattgggcaggacaatttaaaccctgcatcaac-tttaaatcttctcttt 8713930  T
Q  131 tatttgc-tttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgc 229  Q
    ||||||| ||| ||||||   ||  ||| ||||  | || || |||||||| |||||| |  |||||||||||| ||||||||||| || |||||  |      
T  8713929 tatttgcatttctaaataggctcttctacttactgatttgaatgacaatccctgtggaaacgattaacttactactttattacttggtatgattttgtat 8713830  T
Q  230 actttcctaaatttaccatca 250  Q
    |||||||||||||| ||||||    
T  8713829 actttcctaaattttccatca 8713809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 9065915 - 9065696
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||| | ||||||| ||||  ||||||||||||||||||||||||| ||||||  || |  |||| |||| || || | || || |||||||||||||    
T  9065915 aggattccctaatcgttgttaatcttctgaatcaaccaaacctaatcttgcattgggcaggacaatttaaaccctgcatcaac-tttaaatcttctcttt 9065817  T
Q  131 tatttgc-tttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgc 229  Q
    ||||||| ||| ||||||   ||  ||| ||||  | || || |||||||| |||||| |  |||||||||||| ||||||||||| || |||||  |      
T  9065816 tatttgcatttctaaataggctcttctacttactgatttgaatgacaatccctgtggaaacgattaacttactactttattacttggtatgattttgtat 9065717  T
Q  230 actttcctaaatttaccatca 250  Q
    |||||||||||||| ||||||    
T  9065716 actttcctaaattttccatca 9065696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 22487946 - 22487754
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||| | |||| || |||| || ||||||||||||||||||||| |||||||| |||||  |||||||   || |||||||  || |||||  |||||    
T  22487946 aggattccttaattgtggttaaacatctgaatcaaccaaacctaatttcgcattggacatgacaattaaagtcctgcaaccac--tc-aatctcttcttt 22487850  T
Q  131 tatttgcttt-ataaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttg 225  Q
    ||||| ||||  ||||||| |||  |||||||||||||| ||| ||||| || |  ||||  |||||||||||| ||||||||||| || ||||||    
T  22487849 tatttactttcctaaataagttcttctaattaccaagttgaacaacaattcacgaagagacgattaacttactactttattacttggtatgatttg 22487754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 19541972 - 19541931
Alignment:
Q  192 attaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  19541972 attaacttactactttattacttgatacgatttaatgcactt 19541931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 5631604 - 5631514
Alignment:
Q  142 taaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||| |||||  |||||||| | |||||| ||||||  | ||||||  ||||| |||||||||||||||||| ||||||||| |||||||    
T  5631604 taaatagattccattaattaccgatttcaacaacaatcttt-tggagacgattaaattactaatttattacttggtacgatttggtgcactt 5631514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 22463450 - 22463350
Alignment:
Q  126 tcttttatttgctttat-aaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgattt 224  Q
    |||||||||| |||| | |||||| |||| ||||||| | |||||||| ||||| ||||  || |  |||||||||||| ||||||||||| || |||||    
T  22463450 tcttttatttacttttttaaataagttcctctaattatcgagttcaacaacaattcatgaagaaacaattaacttactactttattacttggtatgattt 22463351  T
Q  225 g 225  Q
    |    
T  22463350 g 22463350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 22464908 - 22464808
Alignment:
Q  126 tcttttatttgctttat-aaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgattt 224  Q
    |||||||||| |||| | |||||| |||| ||||||| | |||||||| ||||| ||||  || |  |||||||||||| ||||||||||| || |||||    
T  22464908 tcttttatttacttttttaaataagttcctctaattatcgagttcaacaacaattcatgaagaaacaattaacttactactttattacttggtatgattt 22464809  T
Q  225 g 225  Q
    |    
T  22464808 g 22464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 13365 - 13536
Alignment:
Q  60 aatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaa-atcttctcttttatttgc-tttataaataaattccgcta 157  Q
    ||||||||||||||||||| |||||| |||||  |||||||||||| ||||| |  |||| ||||  |||||||||| | ||||||||||| |||  |||    
T  13365 aatcaaccaaacctaatcttgcattggacatgacaattaaaactctgcaacctc--tcaatatct--tcttttattttcttttataaataagttcttcta 13460  T
Q  158 attaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||| | || |||||| |||| | |||||| || ||||||| |  || |||||||| ||||||||| |||||||    
T  13461 attacctatttgaacgacgatccctttggagactaataacttattgtttgattacttggtacgatttggtgcactt 13536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 20100987 - 20101078
Alignment:
Q  142 taaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttga-tacgatttgatgcactt 233  Q
    |||||||||||  |||| ||||||||| ||||||||||| | |||||| || |||||||||| |||||||||||| || ||||||||||||||    
T  20100987 taaataaattcatctaactaccaagttgaacgacaatccttatggagacta-taacttactactttattacttgagtatgatttgatgcactt 20101078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 20695874 - 20695991
Alignment:
Q  94 aattaaaactctccaaccacattcaaatcttctcttttatttgctttataaataaattccgctaattaccaagttcaacgacaatccatgtggagattat 193  Q
    |||||||||| | ||||||| || ||||||  |||||||||| ||||  |||||||||||  |||||||| |||| ||||||||||| ||||||||  |     
T  20695874 aattaaaactttgcaaccacttttaaatctcttcttttatttactttc-aaataaattcctataattaccgagttgaacgacaatccctgtggagacga- 20695971  T
Q  194 taacttactaatttattact 213  Q
    |||||||||| |||||||||    
T  20695972 taacttactactttattact 20695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 18281184 - 18281077
Alignment:
Q  119 aatcttctcttttatttgcttta-taaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgat 217  Q
    |||||| |||||||||| ||||  |||||| ||||| ||||||||| |||| ||||| |||   |||| |||  |||||||||||  |||||||||||||    
T  18281184 aatcttttcttttatttacttttctaaatagattccactaattaccgagttgaacgaaaatttgtgtgaagacgattaacttactgctttattacttgat 18281085  T
Q  218 acgatttg 225  Q
    ||||||||    
T  18281084 acgatttg 18281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 7741271 - 7741222
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgtggagattat 193  Q
    |||||||||||| ||||||||| || ||||| ||||||||||||||||||    
T  7741271 aataaattccgccaattaccaaattaaacgataatccatgtggagattat 7741222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 11273781 - 11273701
Alignment:
Q  154 gctaattaccaagttcaacgacaatccatgtggagatt-attaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||| | ||||| ||||||||||||| | ||||   || ||||||||| ||||||||||| ||| |||||||||||||    
T  11273781 gctaattgctaagttgaacgacaatccatatcgagaacgataaacttactactttattacttgttacaatttgatgcactt 11273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 28179035 - 28179166
Alignment:
Q  31 aggatttcataatcgtcgttagacttctgaatcaaccaaacctaatctcgcattgaacatggaaattaaaactctccaaccacattcaaatcttctcttt 130  Q
    |||||||| |||||| ||||| || |||||||||||||||| |||||| |||||| ||| |  |||| ||||| | |||| ||  || |||||  |||||    
T  28179035 aggatttcttaatcgccgttaaacatctgaatcaaccaaacataatcttgcattggacaggacaatttaaactttgcaacaac--tccaatctcttcttt 28179132  T
Q  131 tatttgc-tttataaataaattccgctaattacc 163  Q
    ||||||| ||| ||||||| ||||||||||||||    
T  28179133 tatttgcttttctaaataagttccgctaattacc 28179166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 15320053 - 15320142
Alignment:
Q  156 taattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttcctaaatttac 245  Q
    |||||||||| || ||||||||||| |||| |||  || ||||||||| |||||| |||| ||||||||| |||||||||| | ||||||    
T  15320053 taattaccaatttgaacgacaatccttgtgaagaagataaacttactactttattgcttgttacgatttggtgcactttccaatatttac 15320142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 9395527 - 9395437
Alignment:
Q  143 aaataaattccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||||||||||| ||||| | || || |||||||||||||||||  |  || ||||||||| || |||||||| ||||||||| |||||||    
T  9395527 aaataaattccgttaattgctaaattgaacgacaatccatgtggttacgataaacttactacttcattacttgttacgatttgttgcactt 9395437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 15350222 - 15350300
Alignment:
Q  156 taattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcacttt 234  Q
    |||||||||| |||||||||||||| |||| |||  || ||||||||| |||||| |||| ||| ||||| ||||||||    
T  15350222 taattaccaatttcaacgacaatccttgtgaagaagataaacttactattttattgcttgttacaatttggtgcacttt 15350300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 15387126 - 15387208
Alignment:
Q  151 tccgctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    |||| |||||||||| || ||||||||||| |||| |||  || ||||||||| |||||| |||| ||||||||| |||||||    
T  15387126 tccgttaattaccaatttgaacgacaatccttgtgaagaagataaacttactactttattgcttgttacgatttggtgcactt 15387208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 15370694 - 15370783
Alignment:
Q  156 taattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactttcctaaatttac 245  Q
    |||||||||| || ||||||||||| |||| |||  || ||||||||| |||||| |||  ||||||||| |||||||||| | ||||||    
T  15370694 taattaccaatttgaacgacaatccttgtgaagaagataaacttactactttattgcttattacgatttggtgcactttccaatatttac 15370783  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 26498801 - 26498761
Alignment:
Q  144 aataaattccgctaattaccaagttcaacgacaatccatgt 184  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  26498801 aataaattcctctaattaccaagttgaacgacaatccatgt 26498761  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 8037013 - 8037091
Alignment:
Q  155 ctaattaccaagttcaacgacaatccatgtggagattattaacttactaatttattacttgatacgatttgatgcactt 233  Q
    ||||||||| |||| || ||||||| |||||||||   | ||||||||| ||||||||||| ||||||||  |||||||    
T  8037013 ctaattaccgagttgaatgacaatctatgtggagacggtaaacttactactttattacttgttacgatttagtgcactt 8037091  T

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