View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18471_high_18 (Length: 332)

Name: NF18471_high_18
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18471_high_18
NF18471_high_18
[»] chr4 (24 HSPs)
chr4 (39-317)||(12112393-12112669)
chr4 (1-43)||(22819672-22819714)
chr4 (1-36)||(624318-624353)
chr4 (1-36)||(5932163-5932198)
chr4 (29-68)||(5932179-5932218)
chr4 (1-36)||(6141784-6141819)
chr4 (29-68)||(30079856-30079895)
chr4 (1-36)||(30079876-30079911)
chr4 (1-43)||(3078914-3078956)
chr4 (1-43)||(13086045-13086087)
chr4 (1-43)||(20118804-20118846)
chr4 (3-37)||(35820200-35820234)
chr4 (1-39)||(36111402-36111440)
chr4 (1-43)||(37514138-37514180)
chr4 (1-43)||(39344986-39345028)
chr4 (1-43)||(42815427-42815469)
chr4 (1-43)||(47099045-47099087)
chr4 (1-43)||(47519727-47519768)
chr4 (3-36)||(23822253-23822286)
chr4 (29-79)||(41389894-41389946)
chr4 (1-34)||(41486149-41486182)
chr4 (29-78)||(14451391-14451442)
chr4 (28-68)||(21260308-21260348)
chr4 (7-43)||(51887686-51887722)
[»] chr7 (11 HSPs)
chr7 (1-43)||(43573549-43573591)
chr7 (29-79)||(39331982-39332034)
chr7 (29-68)||(19786101-19786140)
chr7 (1-36)||(39231734-39231769)
chr7 (1-43)||(1471297-1471339)
chr7 (1-43)||(13729749-13729791)
chr7 (1-43)||(16980320-16980362)
chr7 (1-39)||(29162982-29163020)
chr7 (7-36)||(13162949-13162978)
chr7 (7-36)||(41402537-41402566)
chr7 (1-41)||(28036769-28036809)
[»] chr5 (14 HSPs)
chr5 (1-43)||(43441761-43441803)
chr5 (3-36)||(15267814-15267847)
chr5 (28-68)||(4430957-4430997)
chr5 (29-68)||(15267794-15267833)
chr5 (1-36)||(16437571-16437606)
chr5 (1-36)||(21064232-21064267)
chr5 (1-36)||(35099011-35099046)
chr5 (29-68)||(41173262-41173301)
chr5 (1-43)||(18695341-18695383)
chr5 (1-43)||(41173275-41173317)
chr5 (29-83)||(6517705-6517761)
chr5 (1-34)||(18842327-18842360)
chr5 (29-79)||(21064248-21064300)
chr5 (3-43)||(14321963-14322003)
[»] chr3 (21 HSPs)
chr3 (1-37)||(11633642-11633678)
chr3 (1-43)||(24482969-24483011)
chr3 (1-43)||(50206976-50207018)
chr3 (29-68)||(8821640-8821679)
chr3 (1-36)||(10206979-10207014)
chr3 (29-68)||(10206995-10207034)
chr3 (1-36)||(30909059-30909094)
chr3 (1-36)||(49363257-49363292)
chr3 (29-68)||(49363273-49363312)
chr3 (29-68)||(54773776-54773815)
chr3 (1-43)||(3347128-3347170)
chr3 (1-43)||(14207264-14207306)
chr3 (1-43)||(14215012-14215054)
chr3 (1-39)||(26996343-26996381)
chr3 (1-43)||(27162476-27162517)
chr3 (1-43)||(27718792-27718834)
chr3 (1-43)||(29573362-29573404)
chr3 (1-43)||(48405433-48405475)
chr3 (1-34)||(37508504-37508537)
chr3 (1-34)||(55013035-55013068)
chr3 (40-68)||(33375870-33375898)
[»] chr1 (29 HSPs)
chr1 (28-68)||(51191798-51191838)
chr1 (1-43)||(36577418-36577460)
chr1 (29-79)||(3603108-3603160)
chr1 (28-68)||(46911303-46911343)
chr1 (7-43)||(48325990-48326026)
chr1 (29-68)||(756866-756905)
chr1 (1-36)||(1852957-1852992)
chr1 (1-36)||(3603141-3603176)
chr1 (1-36)||(4514460-4514495)
chr1 (1-36)||(7128148-7128183)
chr1 (1-36)||(8411724-8411759)
chr1 (29-68)||(8411740-8411779)
chr1 (1-36)||(9008255-9008290)
chr1 (29-68)||(26585901-26585940)
chr1 (1-36)||(33024577-33024612)
chr1 (29-68)||(46082143-46082182)
chr1 (30-68)||(7128128-7128166)
chr1 (1-39)||(20565124-20565162)
chr1 (1-43)||(33054094-33054136)
chr1 (1-43)||(35136867-35136909)
chr1 (1-43)||(49931576-49931618)
chr1 (7-36)||(1790538-1790567)
chr1 (2-39)||(26837479-26837516)
chr1 (1-38)||(29586021-29586058)
chr1 (1-38)||(49570024-49570061)
chr1 (28-68)||(30658869-30658909)
chr1 (29-78)||(35136842-35136893)
chr1 (29-78)||(36577434-36577485)
chr1 (2-42)||(50328148-50328188)
[»] chr8 (18 HSPs)
chr8 (1-36)||(30136021-30136056)
chr8 (1-36)||(1633896-1633931)
chr8 (29-68)||(1633912-1633951)
chr8 (1-36)||(2730967-2731002)
chr8 (1-36)||(7956013-7956048)
chr8 (1-36)||(11017835-11017870)
chr8 (1-36)||(11658006-11658041)
chr8 (29-68)||(16966795-16966834)
chr8 (1-36)||(16966815-16966850)
chr8 (33-68)||(33589256-33589291)
chr8 (29-68)||(37783993-37784032)
chr8 (1-43)||(10644808-10644850)
chr8 (1-43)||(16872162-16872204)
chr8 (1-43)||(34490163-34490205)
chr8 (7-36)||(37783983-37784012)
chr8 (29-78)||(16872178-16872229)
chr8 (4-36)||(34591292-34591324)
chr8 (29-78)||(34718113-34718164)
[»] chr2 (16 HSPs)
chr2 (29-68)||(670489-670528)
chr2 (1-43)||(5031946-5031988)
chr2 (7-43)||(39449290-39449326)
chr2 (1-36)||(18176970-18177005)
chr2 (29-68)||(37257459-37257498)
chr2 (1-43)||(12889838-12889880)
chr2 (1-43)||(13347821-13347863)
chr2 (1-43)||(14954606-14954647)
chr2 (1-43)||(18737880-18737922)
chr2 (1-43)||(35589393-35589435)
chr2 (1-43)||(36774561-36774603)
chr2 (1-43)||(36802919-36802961)
chr2 (1-43)||(39213776-39213818)
chr2 (1-34)||(4758645-4758678)
chr2 (1-41)||(34119658-34119698)
chr2 (8-36)||(37257479-37257507)
[»] scaffold0221 (1 HSPs)
scaffold0221 (3-36)||(8244-8277)
[»] scaffold0321 (2 HSPs)
scaffold0321 (29-68)||(19646-19685)
scaffold0321 (1-36)||(19666-19701)
[»] chr6 (13 HSPs)
chr6 (29-68)||(5327614-5327653)
chr6 (1-36)||(30036800-30036835)
chr6 (1-36)||(30152536-30152571)
chr6 (1-43)||(754444-754486)
chr6 (1-39)||(2777322-2777360)
chr6 (1-43)||(13143388-13143430)
chr6 (1-43)||(15318194-15318236)
chr6 (1-43)||(35213567-35213609)
chr6 (1-34)||(4820283-4820316)
chr6 (1-34)||(34504052-34504085)
chr6 (28-68)||(3610982-3611022)
chr6 (7-43)||(15368835-15368871)
chr6 (29-78)||(35213583-35213634)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-38)||(366321-366358)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 39 - 317
Target Start/End: Complemental strand, 12112669 - 12112393
Alignment:
Q  39 caaaagttgtcactaaatggatgttgaaat--catttctcattcaattatacatgatagagagaggtttggatcaatatccaatattggaaaagaattaa 136  Q
    ||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  12112669 caaaagttgtcactaaatggatgttcaaatatcatttatcattcaattatacatgatagagagaggtttggatcaatatcca---ttggaaaagaattaa 12112573  T
Q  137 ggtttaatctcaaattagaaatttggctttgttgccttaggagatgcattgtaacacatcagtttttaacagaacaagtgttttttctttaaaatattac 236  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12112572 ggtttaatctcaaattagaa-tttggctttgttgccttaggagatgcattgtaacacatcagtttttaacagaacaagtgttttttcttcaaaatattac 12112474  T
Q  237 acttcgagaagaacatatatatgcatcatagtagtgaaaataaaacctcctacatacataatctttctcaactaaaattct 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12112473 acttcgagcagaacatatatatgcatcatagtagtgaaaataaaacctcctacatacataacctttctcaactaaaattct 12112393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22819714 - 22819672
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  22819714 tgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaa 22819672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 624318 - 624353
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  624318 tgtgagtatgagagagaaagttgttgcaaaagttgt 624353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5932163 - 5932198
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5932163 tgtgagtatgagagagaaagttgttgcaaaagttgt 5932198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 5932179 - 5932218
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  5932179 aaagttgttgcaaaagttgtcactaaatggatgtttaaat 5932218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6141784 - 6141819
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  6141784 tgtgagtatgagagagaaagttgttgcaaaagttgt 6141819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 30079895 - 30079856
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  30079895 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 30079856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30079911 - 30079876
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30079911 tgtgagtatgagagagaaagttgttgcaaaagttgt 30079876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3078914 - 3078956
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  3078914 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 3078956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13086087 - 13086045
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  13086087 tgtgagtatgagagagaaagttgttacaaaagttgtcacaaaa 13086045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20118846 - 20118804
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  20118846 tgtgaatataagagagaaagttattgcaaaagttgttataaaa 20118804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 35820234 - 35820200
Alignment:
Q  3 tgaatatgagagagaaagttgttgcaaaagttgtt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  35820234 tgaatatgagagagaaagttgttgtaaaagttgtt 35820200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36111402 - 36111440
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  36111402 tgtgagtatgagagataaagttgttgcaaaagttgttac 36111440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37514138 - 37514180
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  37514138 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 37514180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39344986 - 39345028
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  39344986 tgtgagtatgagagagaaagttgttgcaaaaattgtcacaaaa 39345028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42815469 - 42815427
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  42815469 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 42815427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47099087 - 47099045
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||    
T  47099087 tgtgagtatgtgagagaaagttgttgcaaaagttgtcacaaaa 47099045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47519727 - 47519768
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  47519727 tgtgagtatgagagagaaagttgtt-caaaagttgttacaaaa 47519768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 23822253 - 23822286
Alignment:
Q  3 tgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    |||||||||| |||||||||||||||||||||||    
T  23822253 tgaatatgagggagaaagttgttgcaaaagttgt 23822286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 41389894 - 41389946
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcatt 79  Q
    ||||||||||||||||||||||  ||||||||||| ||  |||||||||||||    
T  41389894 aaagttgttacaaaagttgtcatcaaatggatgttcaattatcatttctcatt 41389946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41486149 - 41486182
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  41486149 tgtgagtatgagagagaaagttgttgcaaaagtt 41486182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 14451442 - 14451391
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    ||||||||| | ||||||||||||||||||||||| ||  ||||||||||||    
T  14451442 aaagttgttgctaaagttgtcactaaatggatgttcaaatatcatttctcat 14451391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 21260348 - 21260308
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||| ||||||||||||||||||| ||||| ||||    
T  21260348 aaaagttgttgcaaaagttgtcactaaatgaatgttcaaat 21260308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 51887722 - 51887686
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  51887722 tatgagagagaaagttgtagcaaaagttgtcacaaaa 51887686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43573549 - 43573591
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  43573549 tgtgaatatgagagagaaagttgttgcaaaagttgtcacaaaa 43573591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 39332034 - 39331982
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcatt 79  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  39332034 aaagttgttacaaaagttgtcactaaatggatgttcaaatatcatttctcatt 39331982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 19786101 - 19786140
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  19786101 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 19786140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39231734 - 39231769
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39231734 tgtgagtatgagagagaaagttgttgcaaaagttgt 39231769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1471297 - 1471339
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  1471297 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 1471339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13729791 - 13729749
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||    
T  13729791 tgtgagtatgagaaagaaagttgttgcaaaagttgtcacaaaa 13729749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16980362 - 16980320
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||    
T  16980362 tgtgagtataagagagaaagttgttgcaaaagttgtcacaaaa 16980320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29162982 - 29163020
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  29162982 tgtgagtatgagagagaaagttgttgtaaaagttgttac 29163020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 13162978 - 13162949
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||    
T  13162978 tatgagagagaaagttgttgcaaaagttgt 13162949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 41402566 - 41402537
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||    
T  41402566 tatgagagagaaagttgttgcaaaagttgt 41402537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28036809 - 28036769
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaa 41  Q
    ||||| ||| |||||||||||||||||||||||||| ||||    
T  28036809 tgtgagtataagagagaaagttgttgcaaaagttgtcacaa 28036769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43441803 - 43441761
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  43441803 tgtgagtatgagagagaaagttgttgcaaaagttgttacaaaa 43441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 15267847 - 15267814
Alignment:
Q  3 tgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||||||    
T  15267847 tgaatatgagagagaaagttgttgcaaaagttgt 15267814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 4430957 - 4430997
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  4430957 aaaagttgttgcaaaagttgtcactaaatggatgttcaaat 4430997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 15267833 - 15267794
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  15267833 aaagttgttgcaaaagttgtcactaaatggatgttaaaat 15267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16437571 - 16437606
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16437571 tgtgagtatgagagagaaagttgttgcaaaagttgt 16437606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21064232 - 21064267
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21064232 tgtgagtatgagagagaaagttgttgcaaaagttgt 21064267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35099011 - 35099046
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35099011 tgtgagtatgagagagaaagttgttgcaaaagttgt 35099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 41173301 - 41173262
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  41173301 aaagttgttacaaaagttgtcacaaaatggatgtttaaat 41173262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18695383 - 18695341
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  18695383 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 18695341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41173317 - 41173275
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  41173317 tgtgagtatgagagagaaagttgttacaaaagttgtcacaaaa 41173275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 6517761 - 6517705
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcattcaat 83  Q
    |||||||| |||||||||||||  ||||||||||| ||  |||||||||||||||||    
T  6517761 aaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcattcaat 6517705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18842327 - 18842360
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  18842327 tgtgagtatgagagagaaagttgttgcaaaagtt 18842360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 21064248 - 21064300
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcatt 79  Q
    ||||||||| ||||||||||||||||||| ||||| ||  |||||||||||||    
T  21064248 aaagttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttctcatt 21064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 14321963 - 14322003
Alignment:
Q  3 tgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||  |||||||||||| ||||    
T  14321963 tgaatatgagagagaaagttgtcacaaaagttgttagaaaa 14322003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11633678 - 11633642
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgtt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11633678 tgtgaatatgagagagaaagttgttgcaaaagttgtt 11633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24482969 - 24483011
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  24482969 tgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaa 24483011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 50206976 - 50207018
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  50206976 tgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaa 50207018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 8821679 - 8821640
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  8821679 aaagttgttacaaaagttgtcactaaatagatgttcaaat 8821640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10206979 - 10207014
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10206979 tgtgagtatgagagagaaagttgttgcaaaagttgt 10207014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 10206995 - 10207034
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  10206995 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 10207034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30909094 - 30909059
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30909094 tgtgaatataagagagaaagttgttgcaaaagttgt 30909059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49363257 - 49363292
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49363257 tgtgagtatgagagagaaagttgttgcaaaagttgt 49363292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 49363273 - 49363312
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  49363273 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 49363312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 54773776 - 54773815
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  54773776 aaagttgttataaaagttgtcactaaatggatgttcaaat 54773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3347128 - 3347170
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    |||||||||||||||||||||||| ||||||||| | ||||||    
T  3347128 tgtgaatatgagagagaaagttgtagcaaaagttatcacaaaa 3347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14207264 - 14207306
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  14207264 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 14207306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14215012 - 14215054
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  14215012 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 14215054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26996381 - 26996343
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  26996381 tgtgagtatgagagagaaagttgttacaaaagttgttac 26996343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27162476 - 27162517
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  27162476 tgtgagtatgagagagaaagttgtt-caaaagttgttacaaaa 27162517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27718792 - 27718834
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  27718792 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 27718834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29573362 - 29573404
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  29573362 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaa 29573404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48405475 - 48405433
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  48405475 tgtgagtatgagagagaaagttgttacaaaagttgtcacaaaa 48405433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37508504 - 37508537
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  37508504 tgtgagtatgagagagaaagttgttgcaaaagtt 37508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 55013068 - 55013035
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  55013068 tgtgaatataagagagaaagttgttgcaaaagtt 55013035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 33375898 - 33375870
Alignment:
Q  40 aaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||||||||||||||||||||||    
T  33375898 aaaagttgtcactaaatggatgttgaaat 33375870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 51191838 - 51191798
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  51191838 aaaagttgttacaaaagttgtcactgaatggatgttgaaat 51191798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36577418 - 36577460
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  36577418 tgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaa 36577460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 3603160 - 3603108
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcatt 79  Q
    ||||||||| ||||||||||||||||||||||||| ||  |||||||||||||    
T  3603160 aaagttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcatt 3603108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 46911343 - 46911303
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  46911343 aaaagttgtaacaaaagttgtcacaaaatggatgttgaaat 46911303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 48326026 - 48325990
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    |||||||||||||||||||||||||||||| ||||||    
T  48326026 tatgagagagaaagttgttgcaaaagttgtcacaaaa 48325990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 756905 - 756866
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  756905 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 756866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1852957 - 1852992
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1852957 tgtgagtatgagagagaaagttgttgcaaaagttgt 1852992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3603176 - 3603141
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  3603176 tgtgagtatgagagagaaagttgttgcaaaagttgt 3603141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4514460 - 4514495
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4514460 tgtgaatatgagatagaaagttgttgcaaaagttgt 4514495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7128183 - 7128148
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  7128183 tgtgaatatgagagaggaagttgttgcaaaagttgt 7128148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8411724 - 8411759
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8411724 tgtgagtatgagagagaaagttgttgcaaaagttgt 8411759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 8411740 - 8411779
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  8411740 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 8411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9008290 - 9008255
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9008290 tgtgagtatgagagagaaagttgttgcaaaagttgt 9008255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 26585901 - 26585940
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  26585901 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 26585940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33024577 - 33024612
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33024577 tgtgagtatgagagagaaagttgttgcaaaagttgt 33024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 46082143 - 46082182
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  46082143 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 46082182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 7128166 - 7128128
Alignment:
Q  30 aagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  7128166 aagttgttgcaaaagttgtcactaaatggatgttcaaat 7128128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20565124 - 20565162
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  20565124 tgtgagtatgagagagaaagttgttgcaaaaattgttac 20565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33054094 - 33054136
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||    
T  33054094 tgtgagtatgagagagaaagttgtagcaaaagttgtcacaaaa 33054136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35136909 - 35136867
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||    
T  35136909 tgtgagtatgagaaagaaagttgttgcaaaagttgtcacaaaa 35136867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49931618 - 49931576
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||| ||||    
T  49931618 tgtgaatatgagagagaaagttgtcacaaaagttgttaaaaaa 49931576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 1790567 - 1790538
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||    
T  1790567 tatgagagagaaagttgttgcaaaagttgt 1790538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 26837516 - 26837479
Alignment:
Q  2 gtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  26837516 gtgagtatgagagagaaaattgttgcaaaagttgttac 26837479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29586058 - 29586021
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgtta 38  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  29586058 tgtgagtatgagagagaaaattgttgcaaaagttgtta 29586021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49570061 - 49570024
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgtta 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  49570061 tgtgaatatgagagagaaagttgtcacaaaagttgtta 49570024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 30658869 - 30658909
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| |||||||||||||| ||||||||||| ||||    
T  30658869 aaaagttgtaacaaaagttgtcacaaaatggatgttcaaat 30658909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 35136893 - 35136842
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    ||||||||| ||||||||||||| ||||||||||| ||  ||||||||||||    
T  35136893 aaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 35136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 36577434 - 36577485
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    ||||||||| ||||||||||||| ||||||||||| ||  ||||||||||||    
T  36577434 aaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 36577485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 50328148 - 50328188
Alignment:
Q  2 gtgaatatgagagagaaagttgttgcaaaagttgttacaaa 42  Q
    |||| ||||| |||||||||||||||||||||||| |||||    
T  50328148 gtgagtatgaaagagaaagttgttgcaaaagttgtcacaaa 50328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30136021 - 30136056
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  30136021 tgtgaatatgagagagaaagttgttgcaaaagttgt 30136056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1633896 - 1633931
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1633896 tgtgagtatgagagagaaagttgttgcaaaagttgt 1633931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 1633912 - 1633951
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  1633912 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 1633951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2730967 - 2731002
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2730967 tgtgaatatgagagagaaagttgttacaaaagttgt 2731002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7956013 - 7956048
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7956013 tgtgagtatgagagagaaagttgttgcaaaagttgt 7956048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11017870 - 11017835
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11017870 tgtgagtatgagagagaaagttgttgcaaaagttgt 11017835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11658006 - 11658041
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11658006 tgtgagtatgagagagaaagttgttgcaaaagttgt 11658041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 16966834 - 16966795
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  16966834 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 16966795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16966850 - 16966815
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16966850 tgtgagtatgagagagaaagttgttgcaaaagttgt 16966815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 33589256 - 33589291
Alignment:
Q  33 ttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33589256 ttgttgcaaaagttgtcactaaatggatgttgaaat 33589291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 37783993 - 37784032
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  37783993 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 37784032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10644808 - 10644850
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||  |||||||||||||||||    
T  10644808 tgtgattatgagagagaaagttgtcacaaaagttgttacaaaa 10644850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16872162 - 16872204
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||    
T  16872162 tgtgagtatgatagagaaagttgttgcaaaagttgtcacaaaa 16872204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34490163 - 34490205
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||    
T  34490163 tgtgagtataagagagaaagttgttgcaaaagttgtcacaaaa 34490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 37783983 - 37784012
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||    
T  37783983 tatgagagagaaagttgttgcaaaagttgt 37784012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 16872178 - 16872229
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    ||||||||| ||||||||||||| ||||||||||| ||  ||||||||||||    
T  16872178 aaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctcat 16872229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 34591324 - 34591292
Alignment:
Q  4 gaatatgagagagaaagttgttgcaaaagttgt 36  Q
    |||||||| ||||||||||||||||||||||||    
T  34591324 gaatatgaaagagaaagttgttgcaaaagttgt 34591292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 34718164 - 34718113
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||||||    
T  34718164 aaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctcat 34718113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 670489 - 670528
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  670489 aaagttgttacaaaagttgtcactaaatggatgttcaaat 670528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5031988 - 5031946
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  5031988 tgtgagtatgagagagaaagttgtcgcaaaagttgttacaaaa 5031946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 39449326 - 39449290
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39449326 tatgagagagaaagttgttgcaaaagttgtcacaaaa 39449290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18177005 - 18176970
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18177005 tgtgagtatgagagagaaagttgttgcaaaagttgt 18176970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 37257498 - 37257459
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  37257498 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 37257459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12889838 - 12889880
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||    
T  12889838 tgtgagtatgagagagaaagttgtagcaaaagttgtcacaaaa 12889880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13347821 - 13347863
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  13347821 tgtgagtatgagagagaaagttgttgcaaaaattgtcacaaaa 13347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14954606 - 14954647
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  14954606 tgtgaatatgagagagaaagttgtt-caaaagttgtcacaaaa 14954647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18737880 - 18737922
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||| ||||    
T  18737880 tgtgaatatgagagagaaagttgtcacaaaagttgttaaaaaa 18737922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35589393 - 35589435
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||    
T  35589393 tgtgagtatgagagagaaaattgttgcaaaagttgtcacaaaa 35589435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36774603 - 36774561
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||||  |||||||||||| ||||    
T  36774603 tgtgaatatgagagagaaagttgtctcaaaagttgttagaaaa 36774561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36802961 - 36802919
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||    
T  36802961 tgtgagtatgagagagaaagttgtagcaaaagttgtcacaaaa 36802919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39213776 - 39213818
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||    
T  39213776 tgtgagtatgagagataaagttgttgcaaaagttgtcacaaaa 39213818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4758645 - 4758678
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  4758645 tgtgaatatgaaagagaaagttgttgcaaaagtt 4758678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34119658 - 34119698
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaa 41  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  34119658 tgtgagtatgagagagaaagttgtcgtaaaagttgttacaa 34119698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 37257507 - 37257479
Alignment:
Q  8 atgagagagaaagttgttgcaaaagttgt 36  Q
    |||||||||||||||||||||||||||||    
T  37257507 atgagagagaaagttgttgcaaaagttgt 37257479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 8277 - 8244
Alignment:
Q  3 tgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||||||||||||||||||||||||||||||||    
T  8277 tgaatatgagagagaaagttgttgcaaaagttgt 8244  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 19685 - 19646
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  19685 aaagttgttgcaaaagttgtcactaaatggatgttcaaat 19646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19701 - 19666
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19701 tgtgagtatgagagagaaagttgttgcaaaagttgt 19666  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 5327614 - 5327653
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  5327614 aaagttgttataaaagttgtcactaaatggatgttcaaat 5327653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30036800 - 30036835
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30036800 tgtgattatgagagagaaagttgttgcaaaagttgt 30036835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30152536 - 30152571
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30152536 tgtgagtatgagagagaaagttgttgcaaaagttgt 30152571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 754444 - 754486
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||    
T  754444 tgtgagtatgagagaaaaagttgttgcaaaagttgtcacaaaa 754486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2777322 - 2777360
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttac 39  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  2777322 tgtgagtatgagagagaaaattgttgcaaaagttgttac 2777360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13143388 - 13143430
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  13143388 tgtgagtatgagagagaaagttgttgcaaaaattgtcacaaaa 13143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15318194 - 15318236
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||||||||  |||||||||| ||||||    
T  15318194 tgtgaatatgagagagaaagttgtaacaaaagttgtcacaaaa 15318236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35213567 - 35213609
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  35213567 tgtgagtatgagagagaaagttgttacaaaagttgtcacaaaa 35213609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4820316 - 4820283
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  4820316 tgtgagtatgagagagaaagttgttgcaaaagtt 4820283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34504085 - 34504052
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagtt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  34504085 tgtgagtatgagagagaaagttgttgcaaaagtt 34504052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3610982 - 3611022
Alignment:
Q  28 aaaagttgttacaaaagttgtcactaaatggatgttgaaat 68  Q
    |||||||||| |||||||| |||||||||||||||| ||||    
T  3610982 aaaagttgttgcaaaagttatcactaaatggatgttcaaat 3611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 15368835 - 15368871
Alignment:
Q  7 tatgagagagaaagttgttgcaaaagttgttacaaaa 43  Q
    ||||||||||||||||||  |||||||||||||||||    
T  15368835 tatgagagagaaagttgtaacaaaagttgttacaaaa 15368871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 35213583 - 35213634
Alignment:
Q  29 aaagttgttacaaaagttgtcactaaatggatgttgaa--atcatttctcat 78  Q
    ||||||||||||||||||||||| |||| |||||| ||  ||||||||||||    
T  35213583 aaagttgttacaaaagttgtcacaaaatagatgttcaaatatcatttctcat 35213634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 366358 - 366321
Alignment:
Q  1 tgtgaatatgagagagaaagttgttgcaaaagttgtta 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  366358 tgtgaatatgagagagaaagttgtcacaaaagttgtta 366321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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