View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_22 (Length: 265)
Name: NF18471_high_22
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 39460723 - 39460876
Alignment:
| Q |
1 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
100 |
Q |
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| T |
39460723 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
39460822 |
T |
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| Q |
101 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
154 |
Q |
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| T |
39460823 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
39460876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 39460912 - 39460968
Alignment:
| Q |
190 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggg |
246 |
Q |
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| T |
39460912 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggg |
39460968 |
T |
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