View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18471_high_3 (Length: 621)

Name: NF18471_high_3
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18471_high_3
NF18471_high_3
[»] chr6 (6 HSPs)
chr6 (17-427)||(6014776-6015188)
chr6 (466-606)||(6014510-6014650)
chr6 (427-471)||(6014693-6014737)
chr6 (500-547)||(9667974-9668021)
chr6 (501-584)||(20368170-20368253)
chr6 (507-568)||(30784570-30784630)
[»] chr3 (5 HSPs)
chr3 (495-580)||(37273135-37273220)
chr3 (490-590)||(24603731-24603831)
chr3 (173-260)||(28978990-28979077)
chr3 (520-587)||(25776111-25776178)
chr3 (520-581)||(4526377-4526438)
[»] chr2 (6 HSPs)
chr2 (495-568)||(34652020-34652093)
chr2 (495-581)||(32821809-32821895)
chr2 (502-547)||(1939323-1939368)
chr2 (501-578)||(43456697-43456774)
chr2 (495-547)||(1742016-1742068)
chr2 (505-553)||(10285888-10285936)
[»] chr1 (9 HSPs)
chr1 (173-258)||(11199913-11199998)
chr1 (494-604)||(16322826-16322936)
chr1 (521-587)||(22810638-22810704)
chr1 (501-575)||(35925696-35925770)
chr1 (520-581)||(26779934-26779995)
chr1 (169-218)||(39030878-39030927)
chr1 (501-573)||(5591956-5592028)
chr1 (500-568)||(26184761-26184829)
chr1 (495-579)||(38867815-38867899)
[»] chr4 (7 HSPs)
chr4 (501-589)||(2996565-2996653)
chr4 (520-581)||(55414429-55414490)
chr4 (501-604)||(23819066-23819169)
chr4 (504-581)||(19250546-19250623)
chr4 (520-581)||(54069426-54069487)
chr4 (501-545)||(1965977-1966021)
chr4 (537-589)||(18628569-18628621)
[»] chr7 (1 HSPs)
chr7 (501-574)||(12110367-12110440)
[»] chr5 (7 HSPs)
chr5 (501-578)||(37611205-37611282)
chr5 (501-578)||(37787935-37788012)
chr5 (495-578)||(11457102-11457184)
chr5 (501-574)||(13604839-13604912)
chr5 (501-574)||(21768187-21768260)
chr5 (223-260)||(28296108-28296145)
chr5 (495-547)||(11700362-11700414)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 6015188 - 6014776
Alignment:
Q  17 aatatgccatatactacatagtagattctttaatcattgatttttt-aacctttcgggagtctggg-agcgttgggagtaacaatagtggaggagtggaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  6015188 aatatgccatatactacatagtagattctttaatcattgatttttttaacctttcgagagtctggggagcgttgggagtaacaatagtggaggagtggaa 6015089  T
Q  115 gttagatcttgtattagatcttgttataggaggtggagtctaacacttgtaggggagattgttgagtttcaagtatgagtggttaagtctcgcgtcacct 214  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6015088 gttagatcttgtattgaatcttgttataggaggtggagtctaacacttgtaggggagattgttgaggttcaagtatgagtggttaagtctcgcgtcacct 6014989  T
Q  215 ataactatgtaaaatattgaatatataagagaggtgactcatatacacaatgtcttgaggatcgtgaacaattagcccattgccacttttgatcccccaa 314  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6014988 ataactatgtaaaatattaaatatataagagaggtgacccatatacacaatgtcttgaggatcgtgaacaattagtccattgccacttttgatcccccaa 6014889  T
Q  315 caaatggtatccaaaccctggttagactcgataggaaacaggagtgtgaccctagtatggaccaagctagtgatgaccgatatacccaatacctaaggtt 414  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6014888 caaatggtatcaaaaccctggttagacttgataggaaacaggagtgtggccctagtatggaccaaactagtgatgaccgatatacccaatacctaaggtt 6014789  T
Q  415 ttaggtaaaaatc 427  Q
    |||||||||||||    
T  6014788 ttaggtaaaaatc 6014776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 466 - 606
Target Start/End: Complemental strand, 6014650 - 6014510
Alignment:
Q  466 ataaaactagtgatactatctaatagaaattatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataactt 565  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6014650 ataaaactagtgatactatctaatagaaattatggaaacaacttatgacaggtgcataagctgttttgagattatttccataggttcttcaagataactt 6014551  T
Q  566 atggaaacaatttataactaatatgagaataggttgacttt 606  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  6014550 atggaaacagtttataactaatatgagaataggttgacttt 6014510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 6014737 - 6014693
Alignment:
Q  427 cattgtcactcccaacatgaacttattgaccacaaacttataaaa 471  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  6014737 cattgtcactcccaacatgaacttattgaccacaaatttataaaa 6014693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 547
Target Start/End: Original strand, 9667974 - 9668021
Alignment:
Q  500 gaaacaacttatgacaggtgcataagctgttttgaaattatttccata 547  Q
    |||||||||||||||| || ||||||||||||| || |||||||||||    
T  9667974 gaaacaacttatgacatgtccataagctgttttcaacttatttccata 9668021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 584
Target Start/End: Original strand, 20368170 - 20368253
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataact 584  Q
    ||||||||||||||| || ||||||||  ||| || |||||| |||| ||||| ||||| | |||||| |||||| ||||||||    
T  20368170 aaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataact 20368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 568
Target Start/End: Complemental strand, 30784630 - 30784570
Alignment:
Q  507 cttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatg 568  Q
    ||||||| | || |||||||||||||||  ||||||||||||| ||| ||||||||||||||    
T  30784630 cttatgaaatgtccataagctgttttgagcttatttccatagg-tctccaagataacttatg 30784570  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 37273220 - 37273135
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttat 580  Q
    |||| |||||||||||||||| || |||||| |||||| || ||||||||||| ||||| ||||||| |||||| ||||| |||||    
T  37273220 ttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 590
Target Start/End: Original strand, 24603731 - 24603831
Alignment:
Q  490 agaaattatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaatat 589  Q
    |||| |||| ||||||  |||||||| |  ||||||||||||| ||  |||||||||| || || ||||||||||||||||||||  |||||||||||||    
T  24603731 agaacttattgaaacagtttatgacatgcccataagctgttttcaagatatttccataagtcctccaagataacttatggaaacaggttataactaatat 24603830  T
Q  590 g 590  Q
    |    
T  24603831 g 24603831  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 28978990 - 28979077
Alignment:
Q  173 ttgttgagtttcaagtatgagtggttaagtctcgcgtcacctataactatgtaaaatattgaatatataagagaggtgactcatatac 260  Q
    |||||| ||||||||| |||||||||||||||| |   |  ||| | | |||||||||||| ||||||||||||||||||||||||||    
T  28978990 ttgttgggtttcaagtgtgagtggttaagtctcacactatttatgaatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 587
Target Start/End: Complemental strand, 25776178 - 25776111
Alignment:
Q  520 cataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaat 587  Q
    ||||||||||||| |  ||| ||||||| ||||||||||| |||||||| |||||| ||||| |||||    
T  25776178 cataagctgttttcagcttacttccataagttcttcaagacaacttatgaaaacaacttatagctaat 25776111  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 4526377 - 4526438
Alignment:
Q  520 cataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    ||||||||||||| || |||||| |||| ||||||||| |||||||||  |||||| |||||    
T  4526377 cataagctgtttttaagttattttcataagttcttcaaaataacttataaaaacaacttata 4526438  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 568
Target Start/End: Original strand, 34652020 - 34652093
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatg 568  Q
    |||| |||||||||||||||| || ||||||||||||| || ||||||||||| | ||| ||||||| ||||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatg 34652093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 581
Target Start/End: Complemental strand, 32821895 - 32821809
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    |||| |||||||||||||||| || ||||||||||||| |  ||||||| ||| | |||| | |||| |||||| ||||| ||||||    
T  32821895 ttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttata 32821809  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 1939323 - 1939368
Alignment:
Q  502 aacaacttatgacaggtgcataagctgttttgaaattatttccata 547  Q
    |||||||||||||| || ||||||||||||| || |||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccata 1939368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 43456697 - 43456774
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaattt 578  Q
    |||||||| |||||| || ||||| ||||||| |  ||||||||||| ||| ||||||||| ||||  ||||||||||    
T  43456697 aaacaactcatgacatgtccataaactgttttcagcttatttccatatgtttttcaagatagcttacagaaacaattt 43456774  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 1742016 - 1742068
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccata 547  Q
    |||| |||||||||||||||| ||||||||||| | || || |||||||||||    
T  1742016 ttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccata 1742068  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 553
Target Start/End: Complemental strand, 10285936 - 10285888
Alignment:
Q  505 aacttatgacaggtgcataagctgttttgaaattatttccataggttct 553  Q
    ||||||||||| || ||||||||||||| || ||||||||||| |||||    
T  10285936 aacttatgacatgtccataagctgttttcaacttatttccataagttct 10285888  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 11199913 - 11199998
Alignment:
Q  173 ttgttgagtttcaagtatgagtggttaagtctcgcgtcacctataactatgtaaaatattgaatatataagagaggtgactcatat 258  Q
    |||||| |||| |||| |||||||||||||||| | |  ||||| | || ||||||| ||| ||||||||||||||||||||||||    
T  11199913 ttgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatat 11199998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 604
Target Start/End: Complemental strand, 16322936 - 16322826
Alignment:
Q  494 attatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaatatgaga 593  Q
    ||||||||||||||||||| || |  |||||| |||||| |  ||||||||||| | ||||||| ||| | |||| |||||  ||||||||  ||||| |    
T  16322936 attatcgaaacaacttatgtcatgcacataagttgtttttagcttatttccataagctcttcaaaatagcctatgaaaacagcttataacttctatgaaa 16322837  T
Q  594 ataggttgact 604  Q
    |||| ||||||    
T  16322836 atagtttgact 16322826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 587
Target Start/End: Original strand, 22810638 - 22810704
Alignment:
Q  521 ataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaat 587  Q
    ||||||||||||||  |||||||| || |||||  | ||||||||||| |||||| |||||||||||    
T  22810638 ataagctgttttgaccttatttccgtaagttctctatgataacttatgaaaacaacttataactaat 22810704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 575
Target Start/End: Complemental strand, 35925770 - 35925696
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaa 575  Q
    ||||| ||||||||| || ||||||||||||| || |||||||||||   ||| || |||| |||||||||||||    
T  35925770 aaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatggaaacaa 35925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 26779934 - 26779995
Alignment:
Q  520 cataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    |||||| |||||| || |||||| |||| ||||||||||||| |||||| |||||| |||||    
T  26779934 cataagttgttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttata 26779995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 39030878 - 39030927
Alignment:
Q  169 gagattgttgagtttcaagtatgagtggttaagtctcgcgtcacctataa 218  Q
    |||||||||| |||| |||| ||||| |||||||||| ||||||||||||    
T  39030878 gagattgttgggttttaagtgtgagttgttaagtctcacgtcacctataa 39030927  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 573
Target Start/End: Original strand, 5591956 - 5592028
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaac 573  Q
    ||||| ||||||||| |||||||||| ||||| || ||||||||||| ||| |  |||||| |||||| ||||    
T  5591956 aaacagcttatgacacgtgcataagccgttttcaatttatttccataagttatctaagatatcttatgaaaac 5592028  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 500 - 568
Target Start/End: Complemental strand, 26184829 - 26184761
Alignment:
Q  500 gaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatg 568  Q
    |||||| ||||||||| || ||||||||||||| | |||||||||||| | ||| || ||||| |||||    
T  26184829 gaaacagcttatgacatgtccataagctgttttcagattatttccataagctctccaggataatttatg 26184761  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 579
Target Start/End: Original strand, 38867815 - 38867899
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaattta 579  Q
    |||| |||| ||||||||| | || ||| || |||||| |  |||||| |||| |||||||||||||||||||| ||||| ||||    
T  38867815 ttatggaaataacttatgatatgtccatcagttgtttttagcttattttcataagttcttcaagataacttatgaaaacagttta 38867899  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 589
Target Start/End: Complemental strand, 2996653 - 2996565
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaatat 589  Q
    ||||||||||||||| || |||||||| |||| || |||||| |||| | ||| ||||||| |||||| |||||| |||||||| ||||    
T  2996653 aaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatat 2996565  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 55414429 - 55414490
Alignment:
Q  520 cataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    |||||||| |||| || |||||| |||| ||||| |||||||||||||| ||||||||||||    
T  55414429 cataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttata 55414490  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 604
Target Start/End: Complemental strand, 23819169 - 23819066
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttataactaatatgagaataggtt 600  Q
    ||||| ||||||||| || |||||| |||||| |  ||||||| ||| | ||||||||||| |||||| |||||  |||||||| |||||| || || ||    
T  23819169 aaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttataacttatatgaaaacagttt 23819070  T
Q  601 gact 604  Q
    ||||    
T  23819069 gact 23819066  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 581
Target Start/End: Complemental strand, 19250623 - 19250546
Alignment:
Q  504 caacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    |||||||||||| || ||||||||| ||| || ||||||  ||| | |||||||||||||||||  |||||| |||||    
T  19250623 caacttatgacatgtccataagctgatttcaacttatttttatatgctcttcaagataacttataaaaacaacttata 19250546  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 54069426 - 54069487
Alignment:
Q  520 cataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaatttata 581  Q
    ||||||||||||| || |||||| |||| ||||||||| |||||||||  |||||| |||||    
T  54069426 cataagctgtttttaacttattttcatatgttcttcaatataacttataaaaacaaattata 54069487  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 545
Target Start/End: Complemental strand, 1966021 - 1965977
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttcca 545  Q
    ||||||||||||||| || ||||||||||||| || |||||||||    
T  1966021 aaacaacttatgacatgttcataagctgtttttaacttatttcca 1965977  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 589
Target Start/End: Original strand, 18628569 - 18628621
Alignment:
Q  537 ttatttccataggttcttcaagataacttatggaaacaatttataactaatat 589  Q
    ||||||||||| | ||| |||||||||||||| ||||| ||||||||| ||||    
T  18628569 ttatttccataagctctccaagataacttatgaaaacagtttataacttatat 18628621  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 12110440 - 12110367
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaaca 574  Q
    ||||||||||||||| || || || ||||||| | ||||||| |||| ||||||||||||| |||||| |||||    
T  12110440 aaacaacttatgacatgttcacaaactgtttttagattattttcataagttcttcaagatagcttatgaaaaca 12110367  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 37611205 - 37611282
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaattt 578  Q
    ||||||||| ||||| || ||||||||||||| |  ||||||||||| | ||| ||||||| |||||| |||||||||    
T  37611205 aaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaattt 37611282  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 578
Target Start/End: Original strand, 37787935 - 37788012
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaattt 578  Q
    ||||||||| ||||| || ||||||||||||| |  ||||||||||| | ||| ||||||| |||||| |||||||||    
T  37787935 aaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaattt 37788012  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 578
Target Start/End: Complemental strand, 11457184 - 11457102
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaacaattt 578  Q
    |||| |||||||||||||||| || ||||||||| ||| | |||||||| ||| | ||| ||||||||||| || |||||||||    
T  11457184 ttatggaaacaacttatgacatgtccataagctg-tttcatattatttctataagctctccaagataacttttgaaaacaattt 11457102  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 13604839 - 13604912
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaaca 574  Q
    ||||| ||||||||| || |||| | |||||| || |||||| |||| | |||||||||||||||||| |||||    
T  13604839 aaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaaca 13604912  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 21768187 - 21768260
Alignment:
Q  501 aaacaacttatgacaggtgcataagctgttttgaaattatttccataggttcttcaagataacttatggaaaca 574  Q
    ||||| ||||||||| || |||| |||||||| || |||||| | || | |||||||||||||||||| |||||    
T  21768187 aaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaaca 21768260  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 28296145 - 28296108
Alignment:
Q  223 gtaaaatattgaatatataagagaggtgactcatatac 260  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  28296145 gtaaaatattgaatgtataagagaggtgacccatatac 28296108  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 547
Target Start/End: Original strand, 11700362 - 11700414
Alignment:
Q  495 ttatcgaaacaacttatgacaggtgcataagctgttttgaaattatttccata 547  Q
    |||| |||||||||||||||| || ||||||||||||| | ||||||| ||||    
T  11700362 ttatggaaacaacttatgacatgtccataagctgttttcagattattttcata 11700414  T

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