View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_5 (Length: 555)
Name: NF18471_high_5
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 15788990 - 15788449
Alignment:
| Q |
1 |
acaatccaatatctactacctttggtacaaattccttgtcaagaagaatattttctggtctaatatcataatgaattattctatattcacattgctcatg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15788990 |
acaatccaatattaactacctttggtacaaattccttgtcaagatgaatattttctggtctaatatcataatgaattattctatattcacatccctcatg |
15788891 |
T |
|
| Q |
101 |
taaataacaaattcctttagctattccaatcgcaattgcacgaagcttttcaaaatctaagtcgtcgcggttcttgctgtcaaataagtacttggctaga |
200 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| | |
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| T |
15788890 |
taaataagaaattcctttagctattccaatcgcaatatcacgtagcttttcaaaatctaagtcatcgcagttcttgctgtcgaataggtacttggctaaa |
15788791 |
T |
|
| Q |
201 |
gaaccatttttaacatactcataaacaagtgcgtttttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattg |
300 |
Q |
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| T |
15788790 |
gaaccattttcaacatactcataaacaagtgcatttttatcacggtgaaggcagaagccataaactttgattatattggtatgatgaattcttgcaattg |
15788691 |
T |
|
| Q |
301 |
tgctaacatcttctatgaattgttcttccattcccatttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtc |
400 |
Q |
| |
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| T |
15788690 |
tgctaacatcttctatgaattgttcttccattcccattataaaacagttgaaatctttgactgcaactttttgtccatttgataattctcctttgaagtc |
15788591 |
T |
|
| Q |
401 |
agttccagaagcactagaacctaacatagctttgtgttgtctcatcttaccaaaagaaaaagaagtgtagttgcacttgtttgtaatttcatcaagttgt |
500 |
Q |
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| T |
15788590 |
agttccagaagcactagaacctaacatggttttgtgttgtctcatcttaccaaaagaaaaagaagtgtagttgcacttgtttgtaatttcatcaagttgt |
15788491 |
T |
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| Q |
501 |
tctggtgtgaatctcattggaataaaatcatcagctttctctgtg |
545 |
Q |
| |
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| T |
15788490 |
tctggtgtgaatctcattgg---aaaatcatcaactttctctgtg |
15788449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 37 - 424
Target Start/End: Complemental strand, 15793155 - 15792768
Alignment:
| Q |
37 |
tgtcaagaagaatattttctggtctaatatcataatgaattattctatattcacattgctcatgtaaataacaaattcctttagctattccaatcgcaat |
136 |
Q |
| |
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|||| ||||||| |||||||||| | |||||||||||||||||||||| || ||||| ||||||||||||| || ||||||||| |||| |||||||| |
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| T |
15793155 |
tgtcgagaagaacattttctggttttatatcataatgaattattctatgtttacattcctcatgtaaataagcgatacctttagctgttccgatcgcaat |
15793056 |
T |
|
| Q |
137 |
tgcacgaagcttttcaaaatctaagtcgtcgcggttcttgctgtcaaataagtacttggctagagaaccatttttaacatactcataaacaagtgcgttt |
236 |
Q |
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| T |
15793055 |
cttatgaagcttttgaaaatcaaagtcattgcggttcttgctgccaaatatgtacttgtctagagaaccattttccacgtattcataaacaagtgctcgt |
15792956 |
T |
|
| Q |
237 |
ttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattgtgctaacatcttctatgaattgttcttccattccca |
336 |
Q |
| |
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||||||||||||| |||||| ||||||| |||||||| ||||||||||| | ||||| |||||||| |||| ||| || ||||||| ||||||||||||| |
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| T |
15792955 |
ttatcacggtgaaagcagaagccataaagtttgactaaattgatatgataagttcttccaattgtgataacttctgctttgaattgctcttccattccca |
15792856 |
T |
|
| Q |
337 |
tttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtcagttccagaagcactagaacctaa |
424 |
Q |
| |
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| || ||||||| | | |||| |||||||| |||||||||||||||||||||||||||||| || ||| |||||| ||||||||| |
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| T |
15792855 |
tatccaaacagttgagaactttcactgcaacattttctccatttgataattctcctttgaagacaacgccaaaagcaccagaacctaa |
15792768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 424
Target Start/End: Original strand, 15778949 - 15779349
Alignment:
| Q |
21 |
tttggtacaaattccttgtcaagaagaatattttctggtctaatatcataatgaattattctatattcacattgctcatgtaaataacaaattcctttag |
120 |
Q |
| |
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|||||||| |||| | |||||||||||| |||||||||| | |||||||||||||||||||| | | ||| | ||||||||||||| ||||||||| | |
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| T |
15778949 |
tttggtactaatttcatgtcaagaagaacattttctggtttgatatcataatgaattattctttgctgacaatcctcatgtaaataagcaattcctttcg |
15779048 |
T |
|
| Q |
121 |
ctattccaatcgcaattgcacgaagcttttcaaaatctaagtcgtcgcggttcttgctgtcaaataagtacttggctagagaaccatttttaacatactc |
220 |
Q |
| |
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| ||||||| ||||| | ||| |||| || || | |||| || |||||||| |||||||||||||| | ||||||||||||| ||||||||| |
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| T |
15779049 |
ccgttccaatagcaatctcctgaaactttcgcaactcaa---cgtcacgattcttgctaccaaataagtacttgtcaagagaaccattttcaacatactc |
15779145 |
T |
|
| Q |
221 |
ataaacaagtgcgtttttatcacggtgaaggcagaatccataaactttgactatattgatatgatgaattcttgcaattgtgctaacatcttctatgaat |
320 |
Q |
| |
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|||||||||||| | | ||| ||| || |||||||||||||| |||||||| ||||||||| | | ||||| |||| |||||||| ||| || ||||| |
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| T |
15779146 |
ataaacaagtgctctcgtgtcatggtcaaagcagaatccataaagtttgactaaattgatatggtaagttcttccaatagtgctaacttctgctttgaat |
15779245 |
T |
|
| Q |
321 |
tgttcttccattcccatttcaaaacagtgaaaatctttgactgcaactttttctccatttgataattctcctttgaagtcagttccagaagcactagaac |
420 |
Q |
| |
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|| |||||||||||||| || ||||||| | | |||| |||||||| ||||||||||||| |||||||||||| ||| || |||| |||||| ||||| |
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| T |
15779246 |
tgctcttccattcccatatccaaacagttgagaacttttactgcaacattttctccatttggtaattctcctttaaagacaactccaaaagcaccagaac |
15779345 |
T |
|
| Q |
421 |
ctaa |
424 |
Q |
| |
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|||| |
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|
| T |
15779346 |
ctaa |
15779349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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