View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_high_7 (Length: 488)
Name: NF18471_high_7
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 7431822 - 7431711
Alignment:
| Q |
204 |
aatgattcaaatatgataaaactaactttgaagagcttacatcatatagtgatggctgcagcatttcttgactcctgttacctttgtgtttggctaacat |
303 |
Q |
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| T |
7431822 |
aatgatgcaaatatgataaaactaactttgaagaggttacatcatatagtgatggctgcagcatttcttgactcctgttaccttggtgtttggctaacat |
7431723 |
T |
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| Q |
304 |
agaagtagtggt |
315 |
Q |
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| T |
7431722 |
agaagtagtggt |
7431711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 7431570 - 7431522
Alignment:
| Q |
429 |
aaatttcattctaatgtgaagcttggtgatattgtttgtggtgccctat |
477 |
Q |
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| T |
7431570 |
aaatttcattctaatgtgaagcttggtgatattgtttgtggtgctctat |
7431522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 7431639 - 7431597
Alignment:
| Q |
390 |
gttggatagaaataactaatatatctgctatgcagtagtaaat |
432 |
Q |
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| T |
7431639 |
gttggatagaaataactaatatatcttctatgcagtagtaaat |
7431597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15837395 - 15837439
Alignment:
| Q |
271 |
ttgactcctgttacctttgtgtttggctaacatagaagtagtggt |
315 |
Q |
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| T |
15837395 |
ttgactgctgttaccttggtgtttggctaacttagaagtattggt |
15837439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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