View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_low_15 (Length: 342)
Name: NF18471_low_15
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 51 - 332
Target Start/End: Original strand, 2794790 - 2795072
Alignment:
| Q |
51 |
gtagtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgagctgtttgaatttaaaactgacg |
150 |
Q |
| |
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||||||||||||||||||| ||| || ||||||||| ||||||| ||||||||| | ||||| |||||| | |||||||||||||||||||| || | |
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| T |
2794790 |
gtagtgaaactaattggtaagctgcaagatggcactgtattttttaagaagggctatagtgatggtgatgaagtggagctgtttgaatttaaaacagatg |
2794889 |
T |
|
| Q |
151 |
agggtaattggaattttccaatgttttggcctctcacattaatttgnnnnnnnatcaaccaaattga-tgtttgttgtgtcttgcagagcaagtgattga |
249 |
Q |
| |
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||||||||| |||||| | |||||| |||||||| ||||||| |||||| ||| ||| || || |||| | ||||||||||||||||| |
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| T |
2794890 |
agggtaattttaatttttccatgtttcaccctctcaccataatttgtttttatatcaactaaagtgaatgctttttgtattgagcagagcaagtgattga |
2794989 |
T |
|
| Q |
250 |
tgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||| |
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| T |
2794990 |
tgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgactattacacctgaatatgcttttggttcat |
2795072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 332
Target Start/End: Complemental strand, 2876927 - 2876644
Alignment:
| Q |
51 |
gtagtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgagctgtttgaatttaaaactgacg |
150 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||| ||||||| |||||||| | ||||| |||||| | |||||||||||||||||||| |||| |
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| T |
2876927 |
gtagtgaaactaattggtaagctgcaagatggcactgtattttttaagaagggatatagtgatggtgatgaagtggagctgtttgaatttaaaacagacg |
2876828 |
T |
|
| Q |
151 |
agggtaattggaattttcca-atgttttggcctctcacattaatttgnnnnnnnatcaaccaaattga-tgtttgttgtgtcttgcagagcaagtgattg |
248 |
Q |
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||||||||| |||||||| |||||| |||||||| ||||||| |||||| ||| ||| || || |||| | |||||||||||||||| |
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|
| T |
2876827 |
agggtaattttaattttccccatgtttcaccctctcaccataatttgtttttatatcaactaaagtgaatgctttttgtattgagcagagcaagtgattg |
2876728 |
T |
|
| Q |
249 |
atgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| | ||| ||||||| |||||||||| |
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|
| T |
2876727 |
atgggcttgatagagctgtactgaccatgaagaaggatgaggtagctttgttgactattgcgcctgaatatgcttttggttcat |
2876644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 333
Target Start/End: Complemental strand, 3500549 - 3500348
Alignment:
| Q |
132 |
tttgaatttaaaactgacgagggtaattggaattttccaatgttttggcctctcaca-ttaatttgnnnnnnnatcaaccaaattgatgtttgttgtgtc |
230 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||| | |||| ||| | |||||||||| | |
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|
| T |
3500549 |
tttgaatttaaaacagacgagggtaatttgaattttccaatgttt-ggcctctcacaattaatttgtttttgtaccaactaaagtattgtttgttgtatt |
3500451 |
T |
|
| Q |
231 |
ttgcagagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttc |
330 |
Q |
| |
|
||||| || | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||| |
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|
| T |
3500450 |
gagcagataaaataattgaagggcttgatagagctgtaatgaccatgaagaagggtgaggtagcgttgttgactattccatatcgatatgcttttggttc |
3500351 |
T |
|
| Q |
331 |
att |
333 |
Q |
| |
|
||| |
|
|
| T |
3500350 |
att |
3500348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 332
Target Start/End: Complemental strand, 2891381 - 2891092
Alignment:
| Q |
51 |
gtagtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgag------ctgtttgaatttaaaa |
144 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||||| |||||||||| ||||| | |||||| |||||||| ||| |||||||||||||||| |
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|
| T |
2891381 |
gtagtaaaactaattggtaagctgcaagatggcactgtatttttgaacaagggatataatgatggtgatgatgatgaagcggatctgtttgaatttaaaa |
2891282 |
T |
|
| Q |
145 |
ctgacgagggtaattggaattttcc-aatgttttggcctctcacattaatttgnnnnnnnatcaaccaaattga-tgtttgttgtgtcttgcagagcaag |
242 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||| |||||||| | ||||| ||||| ||| ||| || || |||| | |||||||||| |
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|
| T |
2891281 |
cagacgagggtaattttaattttcccaatgtttcaccctctcaccatcatttgtttttaaatcaaataaagtgaatgctttttgtattgagcagagcaag |
2891182 |
T |
|
| Q |
243 |
tgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| | ||| ||||||| |||||||||| |
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|
| T |
2891181 |
tgattgatgggcttgataaagctgtactgaccatgaagaagggtgaggtagctttgttgactattacgcctgaatatgcttttggttcat |
2891092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 3495313 - 3495198
Alignment:
| Q |
217 |
atgtttgttgtgtcttgcagagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaa |
316 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
3495313 |
atgtttgttgtattgagcagagcaagtgattgatgggctcgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattgcacccgag |
3495214 |
T |
|
| Q |
317 |
tatgcatttggttcat |
332 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
3495213 |
tatgcttttggttcat |
3495198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 51 - 332
Target Start/End: Original strand, 3143882 - 3144171
Alignment:
| Q |
51 |
gtagtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgag------ctgtttgaatttaaaa |
144 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||||| |||||||||| ||||| | |||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
3143882 |
gtagtaaaactaattggtaagctgcaagatggcactgtatttttgaacaagggatataatgatggtgatgatgatgaagcggatctgtttgaatttaaaa |
3143981 |
T |
|
| Q |
145 |
ctgacgagggtaattggaattttcc-aatgttttggcctctcacattaatttgnnnnnnnatcaaccaaattga-tgtttgttgtgtcttgcagagcaag |
242 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||| |||||||| | ||||| ||||| ||| ||| || || |||| | |||||||||| |
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|
| T |
3143982 |
cagacgagggtaattttaattttcccaatgtttcaccctctcaccatcatttgtttttaaatcaaataaagtgaatgctttttgtattgagcagagcaag |
3144081 |
T |
|
| Q |
243 |
tgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||| | ||| ||||||| |||||||||| |
|
|
| T |
3144082 |
tgattgatgggcttgataaagctgtactgaccatgaagaaaggtgaggtagctttgttgactattacgcctgaatatgcttttggttcat |
3144171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 14388907 - 14388792
Alignment:
| Q |
217 |
atgtttgttgtgtcttgcagagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaa |
316 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
14388907 |
atgtttgttgtattgagcagagcaagtgattgatgggctcgataaagctgtaatgaccatgaagaagggtgaggtagcattgttgactattgcacccgag |
14388808 |
T |
|
| Q |
317 |
tatgcatttggttcat |
332 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
14388807 |
tatgcttttggttcat |
14388792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 3158623 - 3158721
Alignment:
| Q |
234 |
cagagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||| |||||||||| |
|
|
| T |
3158623 |
cagagcaagtgattgatgtgcttaatatagctgtaatgaccatgaagaagggtgaggtagctttgttgactattgcgccacaatatgcttttggttcat |
3158721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 8627631 - 8627754
Alignment:
| Q |
51 |
gtagtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgagctgtttgaatttaaaactgacg |
150 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||| ||||||| ||||||||| || |||||| ||| || | |||||||||||||||||||| |||| |
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|
| T |
8627631 |
gtagtgaaactaattggtaagctgcaagatggcactgtattttttaagaagggctacaatgatggtga--at-cagagctgtttgaatttaaaacagacg |
8627727 |
T |
|
| Q |
151 |
agggtaattggaa-ttttccaatgttt |
176 |
Q |
| |
|
| ||||||| ||| ||||||||||||| |
|
|
| T |
8627728 |
acggtaatttgaatttttccaatgttt |
8627754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 1790896 - 1790977
Alignment:
| Q |
251 |
gggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| | |||| |||||||||| |
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|
| T |
1790896 |
gggcttgatagagctgtaatgagtatgaagaagggtgaggtagcatcgttgactattgcacctaagtatggttttggttcat |
1790977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 3495484 - 3495381
Alignment:
| Q |
53 |
agtgaaactaattggtatgctccatgatggcactatatttttgaagaagggccacgatgatgatgatgatgctgagctgtttgaatttaaaactgacgag |
152 |
Q |
| |
|
||||||||||||||||| | | || ||||||||| | |||||||||||||||| ||| |||||||| || |||||||||||||| | ||| |||||| |
|
|
| T |
3495484 |
agtgaaactaattggtaagttgcaagatggcactgtctttttgaagaagggcc---atggcgatgatgaagcagagctgtttgaattcacaacagacgag |
3495388 |
T |
|
| Q |
153 |
ggtaatt |
159 |
Q |
| |
|
||||||| |
|
|
| T |
3495387 |
ggtaatt |
3495381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 34975569 - 34975472
Alignment:
| Q |
235 |
agagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | || ||||||||| || || | |||||| ||| ||||| |||| | ||||| |||||||||| |
|
|
| T |
34975569 |
agagcaagtaattgatgggcttgatagagccgttaagaacatgaagaaaggggaaattgcattggtgattattcaacctgagtatgcttttggttcat |
34975472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 18847829 - 18847731
Alignment:
| Q |
234 |
cagagcaagtgattgatgggcttgatagagctgtaatgaccatgaagaagggtgaggtagcattgttgactattccacctcaatatgcatttggttcat |
332 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||| |||| | || | |||||||||| ||||| |
|
|
| T |
18847829 |
cagaacaagtcattgatgggcttgataaagctgtattgactatgaagaagggtgaggtagcattattgattattgctcccgagtatgcatttgattcat |
18847731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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