View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_low_2 (Length: 702)
Name: NF18471_low_2
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 11 - 685
Target Start/End: Original strand, 21535971 - 21536645
Alignment:
| Q |
11 |
cacagaagagtttgtgactatgatggaaggtggtagctgcactgccaacagcaaaaatgtagaaaagtttgcgactacgatggaggatggcagcaccacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21535971 |
cacagaagagtttgtgactatgatggaaggtggtagctgcaccgccaacagcaaaaatgtagaagagtttgcgactacgatggaggatggcagcaccacc |
21536070 |
T |
|
| Q |
111 |
cccaccaacaaggcagaagagattgtgatgataatggatggtgtcagcatccccaccaccgacaataacaatgcagaaaagtttgggatgacggtggagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21536071 |
cccaccaacaaggcagaagagattgtgatgataatggatggtgtcagcatccccaccaccgacaataacaatgcagaaaagtttgggatgacagtggagg |
21536170 |
T |
|
| Q |
211 |
atgacatcaccagcaccaccagtagcaacaatgcagaggagttttcgatgacgatggagggtggcagcagcaccacaccaaccaataataactccgaagc |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21536171 |
atgacaccaccagcaccaccagtagcaacaatgcagaggagttttcgatgacgatggagggtggcagcagcaccacaccaaccaataataactccgaagc |
21536270 |
T |
|
| Q |
311 |
gtttgtagtgggatgtttgctgtcgatcaggacaacatttggtgaagaatttgaagcccaagttgttacgtttgatcattcctccaacatcctcggactc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21536271 |
gtttgtagtgggatgtttgctgtcgatcaggacaacatttggtgaagaatttgaagcccaagttgttacgtttgatcattcctccaacatcctcggactc |
21536370 |
T |
|
| Q |
411 |
atggaaggttccaaagacgcccctcttcgaaaaattaggcttttgaacgctgattacatccaagacttcacctttttaggtcaatatgaagacccacttg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21536371 |
atggaaggttccaaagacgcccctcttcgaaaaattaggcttttgaacactgattacatccaagacttcacctttttaggtcaacatgaagacccacttg |
21536470 |
T |
|
| Q |
511 |
atccacgtaatttctacgttgatctcagtgatctccaagcaagagaagaacttgccattagacaagcagaggcagatgctgagaggattggggttggtgt |
610 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21536471 |
atccacgtaatttctacgttgatctcaatgatctccaagcaagagaagaacttgccattagacaagcagaggcagatgctgagaggattggggttggtgt |
21536570 |
T |
|
| Q |
611 |
tacaagcgaagcacagaacatctttgatgctttatctaaaacgcttccagtctgctgggacaagactgtcatagt |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21536571 |
tacaagcgaagcacagaacatctttgatgctttatctaaaacgcttccagtccgctgggacaagactgtcatagt |
21536645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 569 - 653
Target Start/End: Complemental strand, 26482455 - 26482371
Alignment:
| Q |
569 |
tagacaagcagaggcagatgctgagaggattggggttggtgttacaagcgaagcacagaacatctttgatgctttatctaaaacg |
653 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26482455 |
tagacaagctgaagcagatgctgagaggattggggttggtgttacaagtgaagcacagaacatctttgatgcattatctaaaacg |
26482371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 318 - 515
Target Start/End: Complemental strand, 26483247 - 26483050
Alignment:
| Q |
318 |
gtgggatgtttgctgtcgatcaggacaacatttggtgaagaatttgaagcccaagttgttacgtttgatcattcctccaacatcctcggactcatggaag |
417 |
Q |
| |
|
||||| ||||| || |||||||||||||| || ||||| |||||||||| ||||||||||| ||||||| | |||||| ||||| ||| |||| |
|
|
| T |
26483247 |
gtgggttgtttcctttcgatcaggacaacgttaggtgatgaatttgaaggtcaagttgttacttttgatcgtgattccaactacctcgtacttcaagaag |
26483148 |
T |
|
| Q |
418 |
gttccaaagacgcccctcttcgaaaaattaggcttttgaacgctgattacatccaagacttcacctttttaggtcaatatgaagacccacttgatcca |
515 |
Q |
| |
|
|||||||| | | |||| |||||| |||||||||||||| |||||||| ||| |||| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
26483147 |
gttccaaacatggtcctcgtcgaaatattaggcttttgaaagctgattatatcaaagatttcacctttttaggtcaaggtcaagacccacttgatcca |
26483050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University