View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18471_low_21 (Length: 311)

Name: NF18471_low_21
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18471_low_21
NF18471_low_21
[»] chr3 (3 HSPs)
chr3 (1-295)||(24617751-24618045)
chr3 (1-94)||(24105876-24105968)
chr3 (15-94)||(24113288-24113376)
[»] chr8 (6 HSPs)
chr8 (107-295)||(1343438-1343626)
chr8 (107-295)||(1355961-1356149)
chr8 (108-256)||(1360543-1360691)
chr8 (109-258)||(1349886-1350035)
chr8 (113-220)||(11366705-11366812)
chr8 (168-286)||(1353313-1353434)
[»] chr2 (2 HSPs)
chr2 (109-260)||(43365059-43365210)
chr2 (108-248)||(43369219-43369359)
[»] chr7 (1 HSPs)
chr7 (109-220)||(29389250-29389361)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 24617751 - 24618045
Alignment:
Q  1 ttctatttgaaaagagaggcatgtaatgatcaaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617751 ttctatttgaaaagagaggcatgtaatgatcaaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtat 24617850  T
Q  101 tacaaaaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617851 tacaaaaaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgt 24617950  T
Q  201 acaaggccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacaccactaggttatgtgagttgatgtctgtcgcaaaat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24617951 acaaggccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacgccactaggttatgtgagttgatgtctgtcgcaaaat 24618045  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24105968 - 24105876
Alignment:
Q  1 ttctatttgaaaagagaggcatgtaatgatcaaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtat 94  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24105968 ttctatttgaaaaaagaggcatgtaatgatcaaatactcctaactt-tctacttgtgatgtggagaacaaagttctaaatcgagcagcaagtat 24105876  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 24113376 - 24113288
Alignment:
Q  15 agaggcatgtaatgatcaaatactgttaacttatctac---------ttgtgatgtggagaacaaagttctaaatcgagccgcaagtat 94  Q
    ||||||||||||||||||||||||| ||||||||||||         ||||| |||||||||||||||||||||| |||||||||||||    
T  24113376 agaggcatgtaatgatcaaatactgctaacttatctactgacatacattgtggtgtggagaacaaagttctaaattgagccgcaagtat 24113288  T

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Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 107 - 295
Target Start/End: Original strand, 1343438 - 1343626
Alignment:
Q  107 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  ||||    
T  1343438 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaagg 1343537  T
Q  207 ccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacaccactaggttatgtgagttgatgtctgtcgcaaaat 295  Q
     | ||||||||| |||| |||||| |||||||| ||||||||| |||||||| || |||||||||||||||||| |||||  |||||||    
T  1343538 acgctcaaacaaagaacgaaagtcttatgatgagaaattcgttaggatagacgcccctaggttatgtgagttgacgtctgctgcaaaat 1343626  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 107 - 295
Target Start/End: Complemental strand, 1356149 - 1355961
Alignment:
Q  107 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  ||||    
T  1356149 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaagg 1356050  T
Q  207 ccactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacaccactaggttatgtgagttgatgtctgtcgcaaaat 295  Q
     | ||||||||| |||| |||||| |||||||| ||||||||| |||||||| || |||||||||||||||||| |||||  |||||||    
T  1356049 acgctcaaacaaagaacgaaagtcttatgatgagaaattcgttaggatagacgcccctaggttatgtgagttgacgtctgctgcaaaat 1355961  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 1360543 - 1360691
Alignment:
Q  108 aggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggc 207  Q
    |||||||||||||| |||| |||||||||||||| || |||| | || ||||||||| | |||||||||||||||||||| |||| ||||| ||||||||    
T  1360543 aggatcttccaagagttctgcaatatgtcttcctgaaaaagtaagtcttgcaatgttgaacttaattcttgattattgtctatttcatcacatacaaggc 1360642  T
Q  208 cactcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatag 256  Q
    |||||||||||||||  ||| | |||||||||  |||| ||| ||||||    
T  1360643 cactcaaacaaggaaagaaaattgtatgatgaggaatttgttaggatag 1360691  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 1349886 - 1350035
Alignment:
Q  109 ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc 208  Q
    ||||||| ||||| ||||||||||||||||||||||||||| | |||| || |||| | || ||||||||||||||||| |||| ||||| |||||||||    
T  1349886 ggatcttgcaagagttctccaatatgtcttcctcaacaagtaagtccttcattgttgagctcaattcttgattattgtcaatttcatcacatacaaggcc 1349985  T
Q  209 actcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagac 258  Q
    |||| |||||||||  ||| | ||||||||  ||||| ||| ||||||||    
T  1349986 actccaacaaggaaagaaaattgtatgatgcgaaatttgttaggatagac 1350035  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 11366705 - 11366812
Alignment:
Q  113 cttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggccactc 212  Q
    ||||||||| || | || ||||||||||||||||||||| |||||||||| | | ||||||||||||||| ||||||||| |||| |||| ||||| |||    
T  11366705 cttccaagaattgtgcagtatgtcttcctcaacaagtcagtcctgcaatgctgagcttaattcttgattactgtcgatttcatcaagtactaggccgctc 11366804  T
Q  213 aaacaagg 220  Q
    ||||||||    
T  11366805 aaacaagg 11366812  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 1353313 - 1353434
Alignment:
Q  168 cttaattcttgattattgtcgatttgatcacgtacaaggccactcaaa---caaggaacaaaagtcgtatgatgacaaattcgtttggatagacaccact 264  Q
    ||||||||||||||||||||||||| |||||||| ||||||  |||||   ||| |||| ||||||||||| ||| ||||  ||| ||||| ||||||||    
T  1353313 cttaattcttgattattgtcgatttcatcacgtaaaaggccgttcaaacgtcaaagaacgaaagtcgtatgttgagaaatctgttaggataaacaccact 1353412  T
Q  265 aggttatgtgagttgatgtctg 286  Q
    | | |||||||| ||| |||||    
T  1353413 aagctatgtgaggtgacgtctg 1353434  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 43365210 - 43365059
Alignment:
Q  109 ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc 208  Q
    ||||||||||||| || | || |||||||||||||||| |||| | || ||||||  | ||| |||||| |||||||||||||| |||| | || |||||    
T  43365210 ggatcttccaagaattgtgcagtatgtcttcctcaacaggtcagttctccaatgtggagcttgattcttaattattgtcgatttcatcaagcaccaggcc 43365111  T
Q  209 actcaaacaaggaacaaaagtcgtatgatgacaaattcgtttggatagacac 260  Q
     |||||||||||||| |||||| |||||||| |  ||||||  |||||||||    
T  43365110 gctcaaacaaggaacgaaagtcctatgatgatagtttcgttaagatagacac 43365059  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 43369359 - 43369219
Alignment:
Q  108 aggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggc 207  Q
    |||||||||||||| || | ||| ||||||||||||||| || | | || ||||||  | |||||||||| ||||||||||||||  ||  | || ||||    
T  43369359 aggatcttccaagaattgtgcaacatgtcttcctcaacaggttagttcttcaatgtggagcttaattcttaattattgtcgatttcgtctagcaccaggc 43369260  T
Q  208 cactcaaacaaggaacaaaagtcgtatgatgacaaattcgt 248  Q
    | |||| |||||||||||||| |||||||||| || |||||    
T  43369259 cgctcagacaaggaacaaaaggcgtatgatgataatttcgt 43369219  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 29389361 - 29389250
Alignment:
Q  109 ggatcttccaagacttctccaatatgtcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggcc 208  Q
    ||||||||||| | || | | |||||||||||| || ||||| ||||||| ||||| | |||| |||||||||||||||| ||| |||| |||| |||||    
T  29389361 ggatcttccaaaaattgtgcgatatgtcttcctgaaaaagtctctcctgctatgttgagcttagttcttgattattgtcgttttcatcaagtaccaggcc 29389262  T
Q  209 actcaaacaagg 220  Q
     |||||||||||    
T  29389261 gctcaaacaagg 29389250  T

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