View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_low_27 (Length: 244)
Name: NF18471_low_27
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 9022439 - 9022240
Alignment:
| Q |
19 |
aattgccaatcacaaagaccaactgttagcatggaattggttggta-------gaactggaactttacaaatctcttttttggaaaccaaacgaaatagt |
111 |
Q |
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| T |
9022439 |
aattgccaatcacaaagaccaactgttagcatggaattggttggtacttggtagaactggaactttacaaatctcttttttggaaaccaaacgaaatagt |
9022340 |
T |
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| Q |
112 |
atatcgtgctttggacaagtgttgttgtttcaaccttatagagac-nnnnnnncatgggtccttttggtttcctcttcaccctgcttgcttaatttgctt |
210 |
Q |
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| T |
9022339 |
atatcgtgctttggacaagtgttgttgtttcaaccttatagagacaaaaaaaacatgggtccttttggtttcctcttcaccctgcttgcttaatttgctt |
9022240 |
T |
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