View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_low_4 (Length: 563)
Name: NF18471_low_4
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Original strand, 54304548 - 54305079
Alignment:
| Q |
20 |
gtatcaatatgctaatattctgatatggctatttttaaaatgtaagatactatagacctaggattgtgtttggatatgcataaaaaggttcattgagtat |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304548 |
gtatccatatgctaatattctgatatggctatttttaaaatgtaagatactatagacctaggattgtgtttggatatgcataaaaaggttcattgagtat |
54304647 |
T |
|
| Q |
120 |
gacaaatattgattggatatttaattctttgatgtttcgttgtaaaactagagcatggttttggttggatgcattagggtttggacttggagaaatacac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304648 |
gacaaatattgattggatatttaattcttagatgtttcgttgtaaaactagagcatggttttggttggatgcattagggtttggacttggagaaatacac |
54304747 |
T |
|
| Q |
220 |
cactgaaagaaattacaagtattgcaatgagcataattgaagattcatgttttaaaattgtcctaaatgaagcctaataaattaatacttgtgattataa |
319 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304748 |
cactgaaagaaatttcaagtattgcaatgagcataattgaagattcatgttttaaaattgtcctaaatgaagcctaataaattaatacttgtgattataa |
54304847 |
T |
|
| Q |
320 |
cataaatgagcgcgtaaaaaatccatccttccaaaacagtatgtttcaataagtcaaatattaaataatggcgtaaacaaaacagtcctttacatattag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304848 |
cataaatgagcgcgtaaaaaatccatccttccaaaacagtatgtttcaataagtcaaatattaaataatggcgtaaacaaaacagtcctttacatattag |
54304947 |
T |
|
| Q |
420 |
ttaggaaagcaaaacggtgcatttacatcagcaaggaaatccaaacgcagcgttccgagtgtttaaaaatgatagggttttcggtttctcgaaactaggt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54304948 |
ttaggaaagcaaaacggtgcatttacatcagcgaggaaatccaaacgcagcgttccgagtgtttaaaaatgatagggttttcggtttctcgaaactaggt |
54305047 |
T |
|
| Q |
520 |
cgcagaagtccaacccaagtcagtctgtgctg |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54305048 |
cgcagaagtccaacccaagtcagtctgtgctg |
54305079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 324 - 513
Target Start/End: Original strand, 54305592 - 54305778
Alignment:
| Q |
324 |
aatgagcgcgtaaaaaatccatccttccaaaacagtatgtttcaataagtcaaatattaaataatggcgtaaacaaaacagtcctttacatattagttag |
423 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||| |||| || | | |||| |||||||||||||||||||||| ||| |
|
|
| T |
54305592 |
aatgagcgcataaaaaatccagccttccaaaaca--atgtttcaaccagtcaaataataaacaacgacataaataaaacagtcctttacatattagctag |
54305689 |
T |
|
| Q |
424 |
gaaagcaaaacggtgcatttacatcagcaaggaaatccaaacgcagcgttccgagtgtttaaaaatgatagggttttcggtttctcgaaa |
513 |
Q |
| |
|
||||||||||||||| |||| || || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54305690 |
taaagcaaaacggtgcgtttagattagtgaggaaatccaaacgcagcgttccgtgtgtttaaaaa-aatagggttttcggtttctcgaaa |
54305778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University