View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18471_low_6 (Length: 535)
Name: NF18471_low_6
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 185 - 514
Target Start/End: Original strand, 8467380 - 8467709
Alignment:
| Q |
185 |
ctagtatgcttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatttcatacaatcaccattgtatg |
284 |
Q |
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| T |
8467380 |
ctagtatggttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatttcatacaatcaccattgtatg |
8467479 |
T |
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| Q |
285 |
catataatccatcttgtttgatgaaaaccctagctagcagctggtttatgttttcctactttcccatgcctttattttctagtaatttattcttggatga |
384 |
Q |
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| T |
8467480 |
catataatccatcttgtttgatgaaaaccctagctagcagctggtttatgttttcctactttcccatgcctttattttctagtaatttattcttggatga |
8467579 |
T |
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| Q |
385 |
ggctaggtttacattagaagaggctcatattatatctatggtgatcagatcagcgaggttgggggaaattagttttctatttttctttactttaccaaac |
484 |
Q |
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| T |
8467580 |
ggctaggtttacattagaagaggctcatcttatatctatggtgatcagatcagcgaggttgggggaaattagttttctatttttctttactttaccaaac |
8467679 |
T |
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| Q |
485 |
aaattattaagtcaagttttttgtttccta |
514 |
Q |
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| T |
8467680 |
aaattattaagtcaagttttttgtttccta |
8467709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8467200 - 8467315
Alignment:
| Q |
1 |
agcttctctttgtaaagccttcctgatatactattttcttatctgatgagcttgtgcctaactctaactaccacgagagctatcaagcacaaccagcttt |
100 |
Q |
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| T |
8467200 |
agcttctctttgtaaagccttcctgatatactattttcttatctgatgaacttgtgcctaactctaactaccacgagagctatcaagcacaaccagcttt |
8467299 |
T |
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| Q |
101 |
ctgccctaaatcacag |
116 |
Q |
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| T |
8467300 |
ctgccctgaatcacag |
8467315 |
T |
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