View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18471_low_8 (Length: 486)
Name: NF18471_low_8
Description: NF18471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18471_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Original strand, 8757690 - 8758158
Alignment:
| Q |
7 |
gatcggtccattggtaaaacttcttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgctggtagtgaaaactacctt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
8757690 |
gatcggtccattggtaaaacttcttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgccggcagtgaaaactacctt |
8757789 |
T |
|
| Q |
107 |
catgttgatcactccaaggcaattatcagtgcaggtggggcaaaacacttgattcagcttgtatattttggagaacaaatggttcagattccagcattgg |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8757790 |
catgttgatcactccaacgcaattatcagtgcaggtggggcaaaacacttgattcagcttgtatattttggagaacaaatggttcagattccagcattgg |
8757889 |
T |
|
| Q |
207 |
ttctgctctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagcaatctttcat |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8757890 |
ttctgctctcttacattgcattgcatgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagcaatctttcat |
8757989 |
T |
|
| Q |
307 |
gcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8757990 |
gcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcat |
8758089 |
T |
|
| Q |
407 |
cagtaggaagagtagtacattgccatcatcattgtaaatgttaaggtttttcagccactcataattctt |
475 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8758090 |
cagtaggaagaatagtacattgccatcatcattgtaaatgttaaggtttttcagccattcataattctt |
8758158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 198 - 420
Target Start/End: Complemental strand, 32030581 - 32030362
Alignment:
| Q |
198 |
cagcattggttctgctctcttacattgcattgcacgtgccggatagcgaggaacttgctctggctgaggtgctaggagtgcttgaatgggcatccaagca |
297 |
Q |
| |
|
|||| ||||||||||| || || ||||| ||||||||||| || ||||| ||||| || |||||| | || ||||| ||||||||||| || ||||| |
|
|
| T |
32030581 |
cagccttggttctgctatcctatattgcgttgcacgtgccagacagcgaagaactagcaaaagctgagattctgggagttcttgaatgggcgtctaagca |
32030482 |
T |
|
| Q |
298 |
atctttcatgcaacatgatgaaacccttgaagaattgttgcaagaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccatcat |
397 |
Q |
| |
|
| || |||| ||||||||| | |||| | |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| || |
|
|
| T |
32030481 |
acctaacatggctcatgatgaagctattgaggcattgttgcaagagtccaagagtaggctggagctttaccagtctagaggttcaagaggattc---caa |
32030385 |
T |
|
| Q |
398 |
aaattgcatcagtaggaagagta |
420 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
32030384 |
aaattacatcaataggaagagta |
32030362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 28035212 - 28035158
Alignment:
| Q |
340 |
agaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccat |
394 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||| | |||||||||||| |
|
|
| T |
28035212 |
agaagccaaaagtaggttggaactttatcaatcaagaggtaccagaggattccat |
28035158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University