View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_high_1 (Length: 358)
Name: NF18472_high_1
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 10316409 - 10316052
Alignment:
| Q |
1 |
gtactcatctattaaagagtttgttattctaaagtattgaagtgtttagtgccatgatcctcctctaagcaagtacattatattggttaattcccttagt |
100 |
Q |
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| T |
10316409 |
gtactcatctattaaagagtttgttattctaaagtattgaagtgtttagtgccatgatcctcctctaagcaagtacattatattggttaattcccttagt |
10316310 |
T |
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| Q |
101 |
ttattggataaaatgcaacgttaatagtgcatctaaaggctctcatgggtttctacttatggatgcatttttggaagtcatactggagcttttattagtg |
200 |
Q |
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| T |
10316309 |
ttattggataaaatgcaacgttaatagtgcatctaaaggctctcatgggtttctacttatggatgcatttttggaagtcatactggagcttttattagtg |
10316210 |
T |
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| Q |
201 |
ttttctctactaatatttatatcgctaattctcttcatgatgaaattagagcttccatttattctactgaaattgctcattctagagattggaacaattc |
300 |
Q |
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| T |
10316209 |
ttttctctactaatatttatatcgctaattctcttcatgatgaaattagagcttccatttattctactgaaattgctcattctatagattggaacaattc |
10316110 |
T |
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| Q |
301 |
atagcttgaaagtgattctttgttaactatttaagatttctctaacattaatattgtt |
358 |
Q |
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| T |
10316109 |
atggcttgaaagtgattctttgttaactatttaagatttctctaacattaatattgtt |
10316052 |
T |
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