View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18472_high_11 (Length: 215)

Name: NF18472_high_11
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18472_high_11
NF18472_high_11
[»] chr2 (3 HSPs)
chr2 (61-146)||(39823452-39823537)
chr2 (62-146)||(39917426-39917510)
chr2 (12-45)||(39924527-39924560)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 39823452 - 39823537
Alignment:
Q  61 ctggaaccttgtggtattaccactttgtacattcagttgcttcgggacaagtttcatcttcttctttagcctaaaaaatgacgtcc 146  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  39823452 ctggaaccttgtggtattatcactctgtacatttagttgcttcgggacaagtttcatcttcttgtttagtctaaaaaacgacgtcc 39823537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 39917426 - 39917510
Alignment:
Q  62 tggaaccttgtggtattaccactttgtacattcagttgcttcgggacaagtttcatcttcttctttagcctaaaaaatgacgtcc 146  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||  |||||| ||||||    
T  39917426 tggaaacttgtggtattatcactttgtaccttcagttgctttgggacacgtttcatcttcttctttagccataaaaattacgtcc 39917510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 39924527 - 39924560
Alignment:
Q  12 aataatatgtattcaattcacattattttgtaaa 45  Q
    ||||||||||||||||||||||||||||| ||||    
T  39924527 aataatatgtattcaattcacattattttataaa 39924560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University