View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_high_2 (Length: 353)
Name: NF18472_high_2
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 36534724 - 36534403
Alignment:
| Q |
19 |
caaatttaaaatttaaaatagaaacaaaaatgtgcatgcatatggttcaatt-gaccaaataaacatacttttttgtttatataaaattaaagggattat |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36534724 |
caaatttaaaattttaaatagaaacaaaaatgtgcatgcatatggttcaatttgaccaaataaacatacttttttgtttatataaaattaaagggattat |
36534625 |
T |
|
| Q |
118 |
atgatttattatatacttaccctaataatgtggaagaaagagtgcgtttttggcctataactacaacatcaaccccttgatctaaggtatgtaagagaat |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36534624 |
atgatttattctatacttaccctaataatgtggaagaaagagtgcgtttttggcctataactacaacatcaacccgttgatctaaggtatgtaagagaat |
36534525 |
T |
|
| Q |
218 |
agtgttagccctatcttttccattatctatttcaaccttcattgtacgaactttcaatctaggttgagcagctttacaggcattcttcatttcttcaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36534524 |
agtgttagccctatcttttccattatctatttcaaccttcattgtacgaactttcaatttaggttgagcagctttacaggcattcttcatttcttcaaga |
36534425 |
T |
|
| Q |
318 |
aaatcaaccaccgtctctccct |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
36534424 |
aaatcaaccaccgtctctccct |
36534403 |
T |
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