View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_high_3 (Length: 349)
Name: NF18472_high_3
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 26564617 - 26564288
Alignment:
| Q |
11 |
cacagacaccgttcccacgaagaagcaagggtgaaatcatcgaaatgctcgagctgcataatcaacaatgaaaatatcagcacatgtaaaatcagttata |
110 |
Q |
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| T |
26564617 |
cacacacaccgttcccacgaagaagcaagggtgaaatcatcgaaatgctcgagctgcataatcaacaatgaaaatatcagcacatgtaaaatcagttata |
26564518 |
T |
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| Q |
111 |
aaaagtgaaatcggaatcaaaatgagaattcgattagataattgaaaaacctacgtcttcatcttcatcctcttccatatcttcaacttcggtgtgttca |
210 |
Q |
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| T |
26564517 |
aaaagtgaaatcggaatcaaaatgagaattcgattagataattgaaaaacctacgtcttcatcttcatcctcttccatatcttcgacttcggtgtgttca |
26564418 |
T |
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| Q |
211 |
tcgtcatcagtagaatcaggtaggatcttcgtcttgccggtgtt------ggtggaggatgacgccatcgaatctcagatatgatcgcaacgttcactca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26564417 |
tcgtcatcagtagaatcaggtaggatcttcgtcttgccggtgttggtgttggtggaggatgacgccatcgaatctcagatatgatcgcaacgttcactca |
26564318 |
T |
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| Q |
305 |
atgcgcatcatcgtgtatgtatatgtatgt |
334 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26564317 |
atgcgcatcatcgtgtatgtatatgtatgt |
26564288 |
T |
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