View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_10 (Length: 229)
Name: NF18472_low_10
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 52449782 - 52449629
Alignment:
| Q |
74 |
cttttcaaagctcatcctcaatcctcaaatactctccaatatcaccctgatgaagcacaacaataccattaggatccaacttcctacaatcctgtgtaga |
173 |
Q |
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| T |
52449782 |
cttttcaaagctcatcctcaatcctcaaatactctccaatatcaccctgatgaagcacaacaataccattaggatccaacttcctacaatcctgtgtaga |
52449683 |
T |
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| Q |
174 |
cttagcagccaccccaaaacccaaaggcacatcagacatagaaaaaacaacaac |
227 |
Q |
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| T |
52449682 |
cttagcagccaccccaaaacccaaaggcacatcagacatagaaaaaacaacaac |
52449629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 52449852 - 52449817
Alignment:
| Q |
4 |
aaccattacgacgataacccacgactcaaatttcat |
39 |
Q |
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| T |
52449852 |
aaccattacgacgataacccacgactcaaatttcat |
52449817 |
T |
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