View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_11 (Length: 228)
Name: NF18472_low_11
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 24407733 - 24407637
Alignment:
| Q |
98 |
ccggtttaaatacaatgtcatgctcttcaacgttagtgacatagattcaatactctgacgcacattaaatatacaatgtcacatcagttcaaaactt |
194 |
Q |
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| T |
24407733 |
ccggtttaaatacaatgtcatgctcttgaacgttagtgacatagattcaatactctgacacacattaaatatacaatgtcacatcagttcaaaactt |
24407637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 24407495 - 24407445
Alignment:
| Q |
178 |
acatcagttcaaaacttacatgtgcaatttgtgaatagaatctaaatcatt |
228 |
Q |
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| T |
24407495 |
acatcagttcaaaacttacatgtgcaatttgtgaatagaatctaaatcatt |
24407445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24407824 - 24407794
Alignment:
| Q |
1 |
aaaattagagaatttgtaagcttcatggtgt |
31 |
Q |
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| T |
24407824 |
aaaattagagaatttgtaagcttcatggtgt |
24407794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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