View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18472_low_12 (Length: 215)

Name: NF18472_low_12
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18472_low_12
NF18472_low_12
[»] chr2 (3 HSPs)
chr2 (61-146)||(39823452-39823537)
chr2 (62-146)||(39917426-39917510)
chr2 (12-45)||(39924527-39924560)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 39823452 - 39823537
Alignment:
Q  61 ctggaaccttgtggtattaccactttgtacattcagttgcttcgggacaagtttcatcttcttctttagcctaaaaaatgacgtcc 146  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  39823452 ctggaaccttgtggtattatcactctgtacatttagttgcttcgggacaagtttcatcttcttgtttagtctaaaaaacgacgtcc 39823537  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 39917426 - 39917510
Alignment:
Q  62 tggaaccttgtggtattaccactttgtacattcagttgcttcgggacaagtttcatcttcttctttagcctaaaaaatgacgtcc 146  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||  |||||| ||||||    
T  39917426 tggaaacttgtggtattatcactttgtaccttcagttgctttgggacacgtttcatcttcttctttagccataaaaattacgtcc 39917510  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 39924527 - 39924560
Alignment:
Q  12 aataatatgtattcaattcacattattttgtaaa 45  Q
    ||||||||||||||||||||||||||||| ||||    
T  39924527 aataatatgtattcaattcacattattttataaa 39924560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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