View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_5 (Length: 294)
Name: NF18472_low_5
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 31788500 - 31788381
Alignment:
| Q |
1 |
aaggccaagttgatcaatatggcaatcccattagtggtggtgggatgaccggggctactggtcatggtcatggacatcatcaacaacatcatggagttgg |
100 |
Q |
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| T |
31788500 |
aaggccaagttgatcaatatggcaatcccattagtggtggtgggatgaccggtgctactggtcatggtcatggacatcatcaacaacatcatggagttgg |
31788401 |
T |
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| Q |
101 |
agttgatcaaaccacaggtt |
120 |
Q |
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| T |
31788400 |
agttgatcaaaccacaggtt |
31788381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 31788511 - 31788613
Alignment:
| Q |
133 |
tgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataatttcttcttcacaaacaaaaaataacgtg |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31788511 |
tgggtttccatattcatcaaccctacgtgtttgatcaccataaccttgttgatattgagacattgttataa-ttcttcttcacaaacaaaaaataacgtg |
31788609 |
T |
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| Q |
233 |
aagt |
236 |
Q |
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|||| |
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| T |
31788610 |
aagt |
31788613 |
T |
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