View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_6 (Length: 264)
Name: NF18472_low_6
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 18095003 - 18094768
Alignment:
| Q |
17 |
atgaacacggcaagaagggaagagggaagagtcttataatttatatatgtatttatgta--------ctgttatttaaacactttttaggcaaaaacaat |
108 |
Q |
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| T |
18095003 |
atgaacacggcaagaagg-aagagggaagagtcttataatttatatatgtatttatgtattgttgtactgttatttaaacactttttaggcaaaaacagt |
18094905 |
T |
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| Q |
109 |
agaatattccattttatacatacaatcacacgattt--nnnnnnnntacataaatagaaagaaacactgta-nnnnnnnnagaaatagtgatatttctaa |
205 |
Q |
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| T |
18094904 |
agaatattccattttataca---attcacacgaattaaaaaaaaaatacataaatagaaagaaacactgtatttttttttagaaatagtgatatttgtaa |
18094808 |
T |
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| Q |
206 |
taccatttaggtgttatttaactttgatttatgtactaca |
245 |
Q |
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| T |
18094807 |
taccatttacgtgttatttaactttgatttatgtattaca |
18094768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 37852608 - 37852373
Alignment:
| Q |
17 |
atgaacacggcaagaagggaagagggaagagtcttataatttatatatgtatttatgta--------ctgttatttaaacactttttaggcaaaaacaat |
108 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
37852608 |
atgaacacggcaagaagg-aagagggaagagtcttataatttatatatgtatttatgtattgttgtactgttatttaaacactttttaggcaaaaacagt |
37852510 |
T |
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| Q |
109 |
agaatattccattttatacatacaatcacacgattt--nnnnnnnntacataaatagaaagaaacactgta-nnnnnnnnagaaatagtgatatttctaa |
205 |
Q |
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| T |
37852509 |
agaatattccattttataca---attcacacgaattaaaaaaaaaatacataaatagaaagaaacactgtatttttttttagaaatagtgatatttgtaa |
37852413 |
T |
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| Q |
206 |
taccatttaggtgttatttaactttgatttatgtactaca |
245 |
Q |
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| T |
37852412 |
taccatttacgtgttatttaactttgatttatgtattaca |
37852373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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