View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_8 (Length: 247)
Name: NF18472_low_8
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 45668666 - 45668900
Alignment:
| Q |
1 |
caaatccaatttctgcaaggtgatgtatgagaaatagtaccattcattgcaagtgaagaaaaatattcaataaattattattactatcattctgttgatt |
100 |
Q |
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| T |
45668666 |
caaatcaaatttctgcaaggtgatgtatgagaaatagtaccatccattgcaagtgaagaaaaatattcaataaattattattactatcattcagttgatt |
45668765 |
T |
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| Q |
101 |
aacacatttcactgtctcttgaatacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatggattgtttatcaatt |
200 |
Q |
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| T |
45668766 |
aacacatttcactgtctcttgaatacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatggattgtttatcaatt |
45668865 |
T |
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| Q |
201 |
cgtgtttcgctcactgccaaactgagaggcaagat |
235 |
Q |
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| T |
45668866 |
catgtttcgctcactgccaaactgagaggcaagat |
45668900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 37971541 - 37971430
Alignment:
| Q |
123 |
atacagggttcaggactcacatgttgaattctattaaagacttctcaagatcaaacaagaatggattgtttatcaattcgtgtttcgctcactgccaaac |
222 |
Q |
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||||||| ||||||| ||||||| ||||| | | | || |||||||||||||| | ||||||||||| || ||||| || || |||||||||||| | |
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| T |
37971541 |
atacaggattcaggaatcacatggtgaatgttgtgagaggcttctcaagatcaagtcaaaatggattgttcataaattcatgctttgctcactgccaatc |
37971442 |
T |
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| Q |
223 |
tgagaggcaaga |
234 |
Q |
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| T |
37971441 |
tgagaggcaaga |
37971430 |
T |
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