View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18472_low_9 (Length: 230)
Name: NF18472_low_9
Description: NF18472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18472_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 31471128 - 31470927
Alignment:
| Q |
23 |
attatttattgtttctatcgtataatttgttttccctgcta--------atatgttgcctgtaaatgtgtacatgtagtatgagaacttaaatggttcgt |
114 |
Q |
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| T |
31471128 |
attatttattgtttctatcgtataatttgttttccctgctagagaaataatatgttgcctgtaaatgtgtacatgtagtatgagaa-ttaaatggttcat |
31471030 |
T |
|
| Q |
115 |
ccatgaactgaaaaaggatccttattgac----tctttgcaagtgtttattttccaactgatatatcactcctgctatcaatacaacatactgtatacct |
210 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31471029 |
ccatgaactgaaaaaggatccttattgacatcttctttgcaagtgtttattttccaactgatatatcactcctgctatcaatacaacatactgtatacct |
31470930 |
T |
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| Q |
211 |
atg |
213 |
Q |
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||| |
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| T |
31470929 |
atg |
31470927 |
T |
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