View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18474_low_1 (Length: 475)
Name: NF18474_low_1
Description: NF18474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18474_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 2564676 - 2564239
Alignment:
| Q |
11 |
gacatcatcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
110 |
Q |
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| T |
2564676 |
gacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
2564577 |
T |
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| Q |
111 |
gggcttaatgtctta-gagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
209 |
Q |
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| T |
2564576 |
gggctaaatgtcttaagagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
2564477 |
T |
|
| Q |
210 |
attccatcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
309 |
Q |
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| T |
2564476 |
attccatcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
2564377 |
T |
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| Q |
310 |
aaagtccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
409 |
Q |
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| T |
2564376 |
aaagtccacctgagttaataa------------taattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
2564289 |
T |
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| Q |
410 |
tataccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaag |
459 |
Q |
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| T |
2564288 |
tataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaag |
2564239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 2574433 - 2574246
Alignment:
| Q |
148 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaa |
247 |
Q |
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|||||||| |||||||||||||| |||| ||||||| | |||| || ||||||||| || |||||||||||||| |||||||||| |||||||||||| |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagattttggagaa |
2574334 |
T |
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| Q |
248 |
aatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
335 |
Q |
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| T |
2574333 |
aatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 2574570 - 2574502
Alignment:
| Q |
11 |
gacatcatcatgggattgttacctagtatgtagtccacctatgt--tatgtacacattcaatttttagt |
77 |
Q |
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| T |
2574570 |
gacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtacacattcaacttttagt |
2574502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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