View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18474_low_2 (Length: 281)
Name: NF18474_low_2
Description: NF18474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18474_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 18672271 - 18672000
Alignment:
| Q |
2 |
tcttttttcttaagactcatcactttgagaggcccaactcagttgagatgtttgcactcctcaaagaatgagtctgattagacaacaaacaaatgagata |
101 |
Q |
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| T |
18672271 |
tcttttttcttaaggctcatcactttgagaggtccaactcacttgagatgtttgcactccttaaagaatgagtctgattagacaacaaacaaatgagata |
18672172 |
T |
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| Q |
102 |
gctcatgctcttgccgcagaaaccatatcatcatctcgtcccaccatttgttttattattcccttgtgtattaacaatctgattagtaatgaaattatta |
201 |
Q |
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| T |
18672171 |
gctcatgctcttgccgcagaaaccatatcatcatctagtcccaccatttgttttattattcccttgcgtattaacaatctgattagtaatgaaattatta |
18672072 |
T |
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| Q |
202 |
aatactacaaacgattttcgatacaagaaataatatagctctaaatttcatggtgtcatcgttgcctatgct |
273 |
Q |
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| T |
18672071 |
aatgctacaaacgactttcgttacaagaaatagtatagctctaaatttcacggtgtcgtcgttgcctatgct |
18672000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 18674514 - 18674757
Alignment:
| Q |
43 |
gttgagatgtttgcactcctcaaagaatgagtctgattagacaacaaacaaatgagatagctcatgctcttgccgcagaaaccatatcatcatctcgtcc |
142 |
Q |
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| T |
18674514 |
gttgagttgtttgcactgctcaaaaaatgagtctgattagacaacaaacaaatgaggtagttcatgttcttgcagcagaaaccaaatcatcatctagtcc |
18674613 |
T |
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| Q |
143 |
caccatttgttttattattcccttgtgtatta-------------acaatctgattagtaatgaaattattaaatactacaaacgattttcgatacaaga |
229 |
Q |
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| T |
18674614 |
gaccatttgttttattattcccttgtgtgttaacgatctgattagacaatctgatcagtaatgaaattattaaatgctgcaaatgactttcgttacaaga |
18674713 |
T |
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| Q |
230 |
aataatatagctctaaatttcatggtgtcatcgttgcctatgct |
273 |
Q |
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| T |
18674714 |
aatggtatatctctaaatttcacggtgtcgtcgttgcctatgct |
18674757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 33540308 - 33540370
Alignment:
| Q |
4 |
ttttttcttaagactcatcactttgagaggcccaactcagttgagatgtttgcactcctcaaa |
66 |
Q |
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| T |
33540308 |
ttttttcttgaggcccatcactttgggatgcccaactcagttgagctctttgcactccccaaa |
33540370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 26498066 - 26498123
Alignment:
| Q |
4 |
ttttttcttaagactcatcactttgagaggcccaactcagttgagatgtttgcactcc |
61 |
Q |
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||||||||| || | ||||||||||||| ||||| |||| ||||||| |||||||||| |
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| T |
26498066 |
ttttttcttgaggcccatcactttgagaagcccagctcaattgagatctttgcactcc |
26498123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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