View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18474_low_3 (Length: 224)
Name: NF18474_low_3
Description: NF18474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18474_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 16591975 - 16592162
Alignment:
| Q |
20 |
tcaatacccaccttctcatgcccctattcgtcatcaccaacctcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcc |
119 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16591975 |
tcaacaccctccttctcatgcccctattcatcatcaccaacctcgtcaccctgttaaacctccaacccatcaccaccatcaacaccctcctgctcatgcc |
16592074 |
T |
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| Q |
120 |
cctgttcaacctccaacccatcgtcaccatcaccaccctcctgcccatccccctgttcatcaacaacatcctccgcctcatgcccctg |
207 |
Q |
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| T |
16592075 |
cctgttcaacctccaacccatcgtcatcatcaccaccctcctgcccatccccctgttcatcaacaacatcctccggctcatgcccctg |
16592162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 16602477 - 16602612
Alignment:
| Q |
72 |
gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatcgtcaccatcaccaccctcctgcccatcccc |
171 |
Q |
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| T |
16602477 |
gctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatcgtcaccatcaccaccctcctgcccatcccc |
16602576 |
T |
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| Q |
172 |
ctgttcatcaacaacatcctccgcctcatgcccctg |
207 |
Q |
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| T |
16602577 |
ctattcatcaacaacatcctccggctcatgcccctg |
16602612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 16591900 - 16591976
Alignment:
| Q |
65 |
tcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc |
141 |
Q |
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| T |
16591900 |
tcaccctgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaaccttcatcccatc |
16591976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 35335616 - 35335546
Alignment:
| Q |
72 |
gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatcg |
142 |
Q |
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| T |
35335616 |
gctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcg |
35335546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 35335484 - 35335415
Alignment:
| Q |
72 |
gctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc |
141 |
Q |
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| T |
35335484 |
gctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatc |
35335415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 35335747 - 35335679
Alignment:
| Q |
73 |
ctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccctgttcaacctccaacccatc |
141 |
Q |
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| T |
35335747 |
ctaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatc |
35335679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 3175765 - 3175705
Alignment:
| Q |
62 |
tcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccct |
122 |
Q |
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| T |
3175765 |
tcgtcaccctgcaaaacccccaacccatcatcatcatcatcactctcctgctcatgcccct |
3175705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 24541145 - 24541083
Alignment:
| Q |
60 |
cctcgtcacccagctaaacctccaacccatcaccaccatcaacacgctcctgctcatgcccct |
122 |
Q |
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|||||||||||||| ||||| ||||| ||||| || || |||||| ||||||||||| ||||| |
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| T |
24541145 |
cctcgtcacccagcaaaacccccaactcatcatcatcaacaacactctcctgctcattcccct |
24541083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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