View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_16 (Length: 502)
Name: NF18475_high_16
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 4 - 484
Target Start/End: Complemental strand, 40274676 - 40274196
Alignment:
| Q |
4 |
gggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaatggttatctatgattcttctctctcacacaaacaaacaatcaaacccctcca |
103 |
Q |
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| T |
40274676 |
gggagattacatgcaaggggtaagtgagcgtttgactcataaatgtaatggttatatatgattattctctctcacacaaacaaacaatcaaacccctcca |
40274577 |
T |
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| Q |
104 |
taactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttgnnnnnnnnnnnnnnnnnnngacaatatgca |
203 |
Q |
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| T |
40274576 |
taactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttgaaaaataaaaacaacaagagacaatatgca |
40274477 |
T |
|
| Q |
204 |
tcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactttaatctctcaatctcttcgtgacattcataaaatga |
303 |
Q |
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| T |
40274476 |
tcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactctaatttctcaatctcttcgtgacattcataaaatga |
40274377 |
T |
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| Q |
304 |
aacgtgttgnnnnnnntttcttcaagttattaaagaaaattacgtgttacaaaaaatttatttagataaattctcattattccaatggttttctaaagag |
403 |
Q |
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| T |
40274376 |
aacgtgttggaaaaaatttcttcaagttattaaagaaaattaggtattacaaaaaatttctttagataaattttcattattccaatggttttctaaagag |
40274277 |
T |
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| Q |
404 |
aaagttttgtcctttttaaaacgttgcatggaaagtgaaaatatggaaataatatttagagaaggattacgagaatacttt |
484 |
Q |
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| T |
40274276 |
aaagttttgttctttttaaaacgttgcatggaaagtaaaaatatggaaataatatttagagaaggattgcgagaatacttt |
40274196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 199 - 484
Target Start/End: Original strand, 40273753 - 40274038
Alignment:
| Q |
199 |
atgcatcgtcttctttgacagccatacaaccactttcaagagacttgttacttgaaatggttgcaactttaatctctcaatctcttcgtgacattcataa |
298 |
Q |
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| T |
40273753 |
atgcatcattttctttgactaccatacaatcacttccaagagccttgttacatgagacggttgcaactgtaatctctcaaccttttcttgacattcacaa |
40273852 |
T |
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| Q |
299 |
aatgaaacgtgttgnnnnnnntttcttcaagttattaaagaaaattacgtgttacaaaaaatttatttagataaattctcattattccaatggttttcta |
398 |
Q |
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| T |
40273853 |
catgaaatgtcttgaaaagattttcctcaagtcattgaagaacattacgtgttacaaaaaaaatctgcagacaatttcttatgaatcaaatggtttccta |
40273952 |
T |
|
| Q |
399 |
aagagaaagttttgtcctttttaaaacgttgcatggaaagtgaaaatatggaaataatatttagagaaggattacgagaatacttt |
484 |
Q |
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| T |
40273953 |
acaagaaagtgttgtcctttttaaaatgttgcatagaaagtgaaaatatggaaatcatgtttagagaaggattgcgagaacacttt |
40274038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 485
Target Start/End: Complemental strand, 45993481 - 45993343
Alignment:
| Q |
347 |
gtgttacaaaaaatttatttagataaattctcattattccaatggttttctaaagagaaagttttgtcctttttaaaacgttgcatggaaagtgaaaata |
446 |
Q |
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||||||||| |||||| ||| || || || |||| ||||||||||| || ||||| || | ||| ||||||| | ||||| | ||||||||||||| |
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| T |
45993481 |
gtgttacaacaaatttctttcgacaattttccattgatccaatggtttctgaatgagaacgtatcgtcttttttaagaagttgcttagaaagtgaaaata |
45993382 |
T |
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| Q |
447 |
tggaaataatatttagagaaggattacgagaatactttg |
485 |
Q |
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| T |
45993381 |
cggaaataatatttagagaaggattgcttgaatactttg |
45993343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 40273638 - 40273727
Alignment:
| Q |
84 |
caaacaatcaaacccctccataactctccaaattttttagttttcctaatatctaaattttcttgaaccatcacattaaatataactttg |
173 |
Q |
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|||||||||||| |||||| ||||||| | | ||||||| ||| || || ||||||||||||||||||||| ||||| | || ||||||| |
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| T |
40273638 |
caaacaatcaaaaccctccctaactcttcgagttttttaatttacccaagatctaaattttcttgaaccatgacatttagtacaactttg |
40273727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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