View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18475_high_20 (Length: 455)
Name: NF18475_high_20
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 49038176 - 49038607
Alignment:
| Q |
9 |
gattattctatttatctatctattctttaattggaactaggaaattctgcacgaagataaaagtccctaatttataagcacgcaaaaataaaattttgaa |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49038176 |
gattattctatttatttatctattctttaattggaactaggaaattctgcacgaagataaaagtccctaatttataagcacgcaaaaataaaattttgaa |
49038275 |
T |
|
| Q |
109 |
tttttctacatatgtttgctgacatgttattttgannnnnnnnccttctatatggtttttcattttcagaaatacgaaggaactttacttgacatagaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49038276 |
tttttctacatatgtttgctgacatgttattttgttttttttcccttttatatggtttttcattttcagaaatacgaaggaactttacttgacatagaga |
49038375 |
T |
|
| Q |
209 |
attaggtagactcaatatagaattcattcccttgtttgggagagtaaagtggattgtggtgtttaattgtgcaaagatgggggatcactttgatttattg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49038376 |
attaggtagactcaatatagaattcattcccttgtttgggagagtaaagtggattgtggtgtttaattgtgcaaagatgggggatcactttgatttattg |
49038475 |
T |
|
| Q |
309 |
gttgatcggttgctcactgaatcgacgttagaagctgcgattgaaagcagaaaccgtgcgatgcaggctgcgtcctcggaggtgactagcgcagtagtcg |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49038476 |
gttgatcggttgctcactgaatcgacattagaagctgcgattgaaagcagaaaccgtgcgatgcaggctgcgtcctcggaggtgactagcgcagcagtcg |
49038575 |
T |
|
| Q |
409 |
atcattctttgttgaagatgggtatcaaatgt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49038576 |
atcattctttgttgaagatgggtatcaaatgt |
49038607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University