View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_22 (Length: 424)
Name: NF18475_high_22
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 28878399 - 28878785
Alignment:
| Q |
13 |
agacaaagtgatttcaaattctcaattgatttcttcatgcataaaagggtttaaggacaagaacatcaccaccaacaacatgccctcctggcttctcacc |
112 |
Q |
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| T |
28878399 |
agacaaagtgatttcaaattctcaattgatttcttcatgcataaaagggtttaaggacaagaacatcaccaccaacaacatgccctcctggcttctcacc |
28878498 |
T |
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| Q |
113 |
agcatttctggtatgtatttaattctttctaccgtacctacattaatttcttcttcatgatgaaattgtttgagtgtggacttgagaaatgtggggtagc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28878499 |
agcatttctggtatgtatttaattctttctaccgtacctacattaatttcttcttcatgatgaaattgtttgagtgtggacttga-aaatgtggggtagc |
28878597 |
T |
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| Q |
213 |
aaatatatttgaatagttcattcttttatttttaccagttgaatagttcaatcatatcatatcatataatatgaatactcaaataaattcttgacaaatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28878598 |
aaatatatttgaatagttcattcttttatttttaccagttgaatagttca-----atcatatcatataatatgaatactcaaataaattcttgacaaatt |
28878692 |
T |
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| Q |
313 |
gtaagacataaattggtccttaaaatctctaacatagttaaattagccctttataaggtcaaaatctctcctaaacgatggtaggtttgattt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28878693 |
gtaagacataaattggtccttaaaatctctaacatagttaaattagtcctttataaggtcaaaatctctcctaaacgatggtaggtttgattt |
28878785 |
T |
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