View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_26 (Length: 383)
Name: NF18475_high_26
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_26 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 33229760 - 33230143
Alignment:
| Q |
1 |
acatgttttccacaccagcaatactctatcttgcgtgaggtttttcccgaatttatccggaagctttacctgccctttt--cttgaaggaaggtcaaaat |
98 |
Q |
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| T |
33229760 |
acatattttccacaccagcaatgctctatcttgtgtgaggtttttcccgaatttatcccgaagctttacctgcccttttttcttgaaggaaggtcaaaat |
33229859 |
T |
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| Q |
99 |
ttcaactcttgggacttggtggnnnnnnncagcaggtagtgggtataattttcacctcgttgaattgtcgcactatgttttctcgcgagctttagcattt |
198 |
Q |
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| T |
33229860 |
ttcaactct-gggactcgatggaaaaaaacagcaggtagtgggtgtaattttcacctcgttgaattgttgcactatgttttctcgcgagctttagcattt |
33229958 |
T |
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| Q |
199 |
tcctttcgacacaccacttatctttgtttaatattctgatgcgcctactatctttatcttcccattaattttcatctaaaccgttgcattctattaggtc |
298 |
Q |
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| T |
33229959 |
tcctttccacacaccacttatctttgtttaatattctgatgcgcctactatctttatcttcccattatttttcatctaaaccgttgcattctattaggtc |
33230058 |
T |
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| Q |
299 |
caagtgtcatgtgaatttaaaagagagcggattgtatcaacgaagaaaaagcgagcggattcaccacagatttaatacagatgaa |
383 |
Q |
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| T |
33230059 |
caagtatcatgtgaatttaaaagagagcggattgtatcaacaaagaaaaagcgagcggattcaccacagatttaatacagatgaa |
33230143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 33221840 - 33221882
Alignment:
| Q |
287 |
ttctattaggtccaagtgtcatgtgaatttaaaagagagcgga |
329 |
Q |
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| T |
33221840 |
ttctattagggccatgtgtcatgtgaatttaaaagagaacgga |
33221882 |
T |
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