View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_high_3 (Length: 759)

Name: NF18475_high_3
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_high_3
NF18475_high_3
[»] chr6 (5 HSPs)
chr6 (18-752)||(33673192-33673923)
chr6 (18-109)||(33685031-33685120)
chr6 (97-167)||(33663141-33663211)
chr6 (22-94)||(33692257-33692328)
chr6 (18-113)||(33663225-33663322)
[»] chr1 (5 HSPs)
chr1 (459-711)||(20302990-20303242)
chr1 (178-319)||(20291138-20291279)
chr1 (337-392)||(20302904-20302959)
chr1 (546-624)||(25704807-25704886)
chr1 (208-256)||(47527937-47527985)
[»] scaffold0016 (2 HSPs)
scaffold0016 (32-141)||(89608-89715)
scaffold0016 (31-81)||(110738-110788)
[»] chr8 (1 HSPs)
chr8 (546-624)||(9711398-9711477)
[»] chr2 (1 HSPs)
chr2 (173-256)||(16427597-16427679)
[»] chr5 (1 HSPs)
chr5 (170-256)||(3261703-3261789)
[»] chr3 (2 HSPs)
chr3 (208-256)||(51291720-51291768)
chr3 (173-256)||(47955218-47955301)


Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 752
Target Start/End: Complemental strand, 33673923 - 33673192
Alignment:
Q  18 atgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtcttttgtatatatcatatatgtatgttt 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  33673923 atgatgttgctctttttgtaat-gaatagtgtttaattcacactatggttttggagctatgtaaaact--gtcttttgtatatatcatatatgtatgttt 33673827  T
Q  118 ttctattttctggtgttaatagtataaaagtttaatttccatcggttattattattagggtaaattacactaacctccctcaaaattttcttaaatgaaa 217  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  | |||||||||||||||    
T  33673826 ttctattttccggtgttaatagtataaaagtttaatttccattggttattattattaggataaattacactaacctccctcgtagttttcttaaatgaaa 33673727  T
Q  218 caaacagcccctctaattttataatagacattaacctcctcggaagtctcataatttgacagatacctccctttacaacttaacaccgttaattatccgt 317  Q
    ||||||  |||||||||||||||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  33673726 caaacactccctctaattttataatagacattaacctcctccaaagtctcataattagaaagatacctccctttacaacttaacaccgttaattatccgt 33673627  T
Q  318 taaaattaaagccactactttttctatttctagttatgataatcttcatctactaaaccatagaatatctgcaaacaattcttacct-nnnnnnnnnntc 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           ||    
T  33673626 taaaattaaagtcactactttttctatttctagttatgataatcttcatctactaaaccgtagaatatctgcaaacaattcttacctaaaaaaaaaaatc 33673527  T
Q  417 tgcaaacagttttaattctaagcnnnnnnncctcgttctattagccattttttgtaacctttaatggaaaggnnnnnnnggctttgatttcttgtcacat 516  Q
    ||||||| |||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||       |||||||||||||||||||||    
T  33673526 tgcaaaccgttttaattctaagctttttttcctcgttctattagccattttttgtaaccttcaatggaaaggtttttttggctttgatttcttgtcacat 33673427  T
Q  517 attcctcccaacaattcataaaaatttcaaccaattgaagcttgtgattattccaaaggcaaatgggtttgggacgaacttaatattcaaataaattgta 616  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33673426 attcctccaaacaattcacaaaaatttcaaccaattgaatcttgtgattattccaaaggcaaatgggtttgggacgaacttaatattcaaataaattgtg 33673327  T
Q  617 ccatgaaattgacannnnnnngatcctggatttcgatgccagcaaaacgaacagagaaaatatatatccacaaaagcatgatgtacgagaatggaatgga 716  Q
    |||||||| |||||       |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33673326 ccatgaaactgacatttttttgatcctggattttgatgccagcaaaacgaacagag-aaatatatatccacaaaagcatgatgtacgagaatggaatgga 33673228  T
Q  717 caagaatcaaagagacatacatgagcttcatctgtg 752  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33673227 caagaatcaaagagacatacatgagcttcatttgtg 33673192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 33685120 - 33685031
Alignment:
Q  18 atgatgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtcttttgtatatatcatatat 109  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||  |||||| |||||||||||||||||    
T  33685120 atgatgttggtctttttgtatttgaatagtgttaaattcacactatggttttggagctatgaaaaa--ctgtctcttgtatatatcatatat 33685031  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 33663211 - 33663141
Alignment:
Q  97 atatatcatatatgtatgtttttctattttctggtgttaatagtataaaagtttaatttccatcggttatt 167  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||| ||| |||||| || |||||||||||    
T  33663211 atatatcatatatgtatgtttttatattttcttgtgttgatagtaaaaaggtttaactttcatcggttatt 33663141  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 33692328 - 33692257
Alignment:
Q  22 tgttgctctttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtctttt 94  Q
    ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||| ||| ||||||||    
T  33692328 tgttggtctttttgtaattgaacagtgttaaaatcacattatggttttggagctatgtaatact-tgtctttt 33692257  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 33663322 - 33663225
Alignment:
Q  18 atgatgttgctctttttgtaattgaatagtgtttaattcacac----tatggttttggagctatgtaaaactctgtcttttgtata-tatcatatatgta 112  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||    |||||||||||| || |||||||  |||||||||||| | |||||||||||||    
T  33663322 atgatgttg-tctttatgtaattgattagtgtttaattcacactatatatggttttggatctctgtaaaa--ctgtcttttgtacattatcatatatgta 33663226  T

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Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 459 - 711
Target Start/End: Original strand, 20302990 - 20303242
Alignment:
Q  459 agccattttttgtaacctttaatggaaaggnnnnnnnggctttgatttcttgtcacatattcctcccaacaattcataaaaatttcaaccaattgaagct 558  Q
    ||||||||||||||||||||||| ||||||       ||||||||||| ||||||| |||| |||||||||| ||| ||||||||||||||||| || ||    
T  20302990 agccattttttgtaacctttaatcgaaaggtttgtt-ggctttgatttattgtcacgtatttctcccaacaaatcacaaaaatttcaaccaattaaaact 20303088  T
Q  559 tgtgattattccaaaggcaaatgggtttgggacgaa-cttaatattcaaataaattgtaccatgaaa-ttgacannnnnnng-atcctggatttcgatgc 655  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||| ||| |          ||||||||||  |||||    
T  20303089 tgtgattactccaaaggcaaatgggtt-gggacgaaacttaatattcaaataaattttcccatgaaaattgtcctttattattatcctggattctgatgc 20303187  T
Q  656 cagcaaaacgaacagagaaaatatatatccacaaaagcatgatgtacgagaatgga 711  Q
    ||||||||| || || || |||| ||||||||||||| ||||||||| ||||||||    
T  20303188 cagcaaaacaaatag-gacaatagatatccacaaaagtatgatgtacaagaatgga 20303242  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 20291138 - 20291279
Alignment:
Q  178 taaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcctcggaagtctcataatttgac 277  Q
    ||||| |||||||||||||   |  ||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||  |||| ||||||||  ||    
T  20291138 taaataacactaacctcccctgaggttttcttaaataacacaaacaccccctctagttttataatagacattaacctcctccaaagtttcataattaaac 20291237  T
Q  278 agatacctccctttacaacttaacaccgttaattatccgtta 319  Q
    |||||| ||||||||||||||||||| |||| | ||||||||    
T  20291238 agatacatccctttacaacttaacactgttactcatccgtta 20291279  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 20302904 - 20302959
Alignment:
Q  337 ttttctatttctagttatgataatcttcatctactaaaccatagaatatctgcaaa 392  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  20302904 ttttcgatttctaattatgataatcttcatctactaaaccatataatatctacaaa 20302959  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 624
Target Start/End: Original strand, 25704807 - 25704886
Alignment:
Q  546 accaattgaagcttgtgattattccaaaggcaaatgggtttgggacg-aacttaatattcaaataaattgtaccatgaaa 624  Q
    |||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| |||||| |||| |||||| ||||||    
T  25704807 accaattgaagcatgtgatttttccaaaggtcaatgggtttgggacgaaacttattattcacataagttgtacgatgaaa 25704886  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 47527985 - 47527937
Alignment:
Q  208 ttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 256  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  47527985 ttaaatgacactgacaccccctctaattttataatagacattaacctcc 47527937  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 89608 - 89715
Alignment:
Q  32 tttgtaattgaatagtgtttaattcacactatggttttggagctatgtaaaactctgtct-tttgtatatatcatatatgtatgtttttctattttctgg 130  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||| | ||  | ||||| ||||||||||||   |||||||||||||| ||||||| |    
T  89608 tttgtaattaaatagtgtttaaatcacattatggttttggagctat-tgaatatttgtctctttgtatatatc--ttatgtatgtttttccattttcttg 89704  T
Q  131 tgttaatagta 141  Q
    |||| ||||||    
T  89705 tgttgatagta 89715  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 110788 - 110738
Alignment:
Q  31 ttttgtaattgaatagtgtttaattcacactatggttttggagctatgtaa 81  Q
    ||||||||||||||||||||||| |  ||||||||||||| |||| |||||    
T  110788 ttttgtaattgaatagtgtttaaatttcactatggttttgtagctgtgtaa 110738  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 624
Target Start/End: Original strand, 9711398 - 9711477
Alignment:
Q  546 accaattgaagcttgtgattattccaaaggcaaatgggtttgggacg-aacttaatattcaaataaattgtaccatgaaa 624  Q
    |||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| |||||| |||| |||||| ||||||    
T  9711398 accaattgaagcatgtgatttttccaaaggtcaatgggtttgggacgaaacttattattcagataagttgtacgatgaaa 9711477  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 16427679 - 16427597
Alignment:
Q  173 tagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 256  Q
    |||||||||||||||| |||||| | ||||||||||||||| | || |||| |||||||| ||||  |||| ||||||||||||    
T  16427679 tagggtaaattacactcacctcctttaaaattttcttaaataacactaaca-cccctctagttttgaaataaacattaacctcc 16427597  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 3261703 - 3261789
Alignment:
Q  170 tattagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 256  Q
    |||||||| ||||||||||| |||||||  || || | |||||| | ||||||  |||||||||||||||||||||||  |||||||    
T  3261703 tattagggaaaattacactagcctcccttgaagttcttttaaataacacaaactccccctctaattttataatagacaaaaacctcc 3261789  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 51291720 - 51291768
Alignment:
Q  208 ttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 256  Q
    |||||||  ||||||| |||||||||||||| |||||||||||||||||    
T  51291720 ttaaatggcacaaacaccccctctaattttaaaatagacattaacctcc 51291768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 47955218 - 47955301
Alignment:
Q  173 tagggtaaattacactaacctccctcaaaattttcttaaatgaaacaaacagcccctctaattttataatagacattaacctcc 256  Q
    |||||||||||||||| ||||||||  || |||||||||||   || |||| |||||||| ||||  |||| ||||||||||||    
T  47955218 tagggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctcc 47955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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