View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_31 (Length: 370)
Name: NF18475_high_31
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 14232226 - 14232341
Alignment:
| Q |
13 |
aagggagaagagttacctaatacggtggaatggagtggatcattattgtttcttgtgaagaattgatctctaattccgatatgagtgaatgaagctcaaa |
112 |
Q |
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| T |
14232226 |
aagggagaagagttacctaatacggtggaatggagtggatcattattgtttcttgtgaagaattgatctctaattcctatatgagtgaatgaagctcaaa |
14232325 |
T |
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| Q |
113 |
tttgcaaaacctaatt |
128 |
Q |
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| T |
14232326 |
tttgcaaaacctaatt |
14232341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 225 - 344
Target Start/End: Original strand, 14232443 - 14232562
Alignment:
| Q |
225 |
aatggcgtggccttcttaaaacaacatactcctttttcctagggcatcaacactcgaagttgaatagattgaacggttatgatcaattattaaatttaaa |
324 |
Q |
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| T |
14232443 |
aatggcgtggccttcttaaaacggcatactccttttttctagggcatcaacaatcgaagttgaatagattgaacggttatgatcaattattaaatttaaa |
14232542 |
T |
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| Q |
325 |
atctgcactcagccatgcac |
344 |
Q |
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| T |
14232543 |
atctgcactcagccatgcac |
14232562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 14232364 - 14232428
Alignment:
| Q |
110 |
aaatttgcaaaacctaattggaataagaaaattaagaaagttgaataatagatgatttttactaa |
174 |
Q |
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| T |
14232364 |
aaatttgcaaaacctaatttgaataagaaaattaagaaagttgaataatagatgatttttactaa |
14232428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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