View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18475_high_33 (Length: 369)
Name: NF18475_high_33
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 4289691 - 4290023
Alignment:
| Q |
20 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
119 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
4289691 |
taattcatttggatcctttattacttttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtgatactaattcagatacttcattttcaagc |
4289790 |
T |
|
| Q |
120 |
tttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4289791 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
4289890 |
T |
|
| Q |
211 |
gaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattctt |
310 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4289891 |
gaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaagattctt |
4289990 |
T |
|
| Q |
311 |
agcagataaatgattgaaagcagcatgagattc |
343 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |
|
|
| T |
4289991 |
accagataaatgattgaaatcagcatgagattc |
4290023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 4266032 - 4265700
Alignment:
| Q |
20 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
119 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4266032 |
taattcatttggatccttgattatttttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtaattctaattcagatacttcattttcaagc |
4265933 |
T |
|
| Q |
120 |
tttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4265932 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
4265833 |
T |
|
| Q |
211 |
gaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattctt |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||| | ||||||||| |
|
|
| T |
4265832 |
gaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtttagcttcagtaagattctt |
4265733 |
T |
|
| Q |
311 |
agcagataaatgattgaaagcagcatgagattc |
343 |
Q |
| |
|
| | || | |||||||||| |||||| |||||| |
|
|
| T |
4265732 |
acctgaaagatgattgaaatcagcatcagattc |
4265700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 4260486 - 4260154
Alignment:
| Q |
20 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
119 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||| |||||| ||||| |||||||| || |||||||||| |||||| |||||||| |
|
|
| T |
4260486 |
taattcatttggatccttaattaattttctatcatagaaaggacaaaactcatgtggcaaacaaaggggtaatactaattcagatacttcaatttcaagc |
4260387 |
T |
|
| Q |
120 |
tttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4260386 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
4260287 |
T |
|
| Q |
211 |
gaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattctt |
310 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
4260286 |
gaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatgaatctgtgtagcttcagaaagattctt |
4260187 |
T |
|
| Q |
311 |
agcagataaatgattgaaagcagcatgagattc |
343 |
Q |
| |
|
| |||| |||||||||||| ||||||||||||| |
|
|
| T |
4260186 |
accagagaaatgattgaaatcagcatgagattc |
4260154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 4298275 - 4298607
Alignment:
| Q |
20 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
119 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||| || ||||||| ||||||| | ||| ||| ||| |
|
|
| T |
4298275 |
taattcgtttggatccttgattacttttctatcatagaaaggacaaaactcatgaggcaaacaaatggatgattctgattcagatatttcctttccaata |
4298374 |
T |
|
| Q |
120 |
tttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4298375 |
tttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttg |
4298474 |
T |
|
| Q |
211 |
gaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattctt |
310 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
4298475 |
gaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatttgtgtagcttcagaaggattctt |
4298574 |
T |
|
| Q |
311 |
agcagataaatgattgaaagcagcatgagattc |
343 |
Q |
| |
|
| |||||| || ||||||| ||| || |||||| |
|
|
| T |
4298575 |
accagatagataattgaaatcagaatcagattc |
4298607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 168 - 362
Target Start/End: Original strand, 4285109 - 4285312
Alignment:
| Q |
168 |
ccatctaaaacagcatgatgtgaagtaatacc---------tccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
259 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgatgtatgtgatga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattctgaagtatgtgatga |
4285308 |
T |
|
| Q |
359 |
tgtc |
362 |
Q |
| |
|
|||| |
|
|
| T |
4285309 |
tgtc |
4285312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 4284992 - 4285111
Alignment:
| Q |
20 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtagcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4284992 |
taattcatttggatccgtgattacatttctatcatagaaaggacaaaattcatgtggcaaagaaaggggtgattctaattcagaaacttcattttcaagc |
4285091 |
T |
|
| Q |
120 |
tttctacataggtaagccca |
139 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4285092 |
tttctacataggtaagccca |
4285111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University