View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_34 (Length: 363)
Name: NF18475_high_34
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 28603128 - 28603457
Alignment:
| Q |
19 |
aacctacttgtcaacattagtaccattgagactgccatttcttcccaagggtggccacctgcggtgaaccacgacctcagggacggagacggtagtggtg |
118 |
Q |
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| T |
28603128 |
aacctacttgtcaacattagtaccattgagactgccatttcttcccaagggtggccacctgtggtgaaccacgacctcagggacggagacggtagtggtg |
28603227 |
T |
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| Q |
119 |
gaccctctacttcaagattcggcattgattatccggtggccgatatggcggatgtaatgttcaactcgggtagtagcagtggcaatagtatggaatcact |
218 |
Q |
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| T |
28603228 |
gaccctctaattcaagattcggcattgattatccggtggccgatatggcggatgtaatgttcaactcgggtagtagcagtggcaatagtatggaatcact |
28603327 |
T |
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| Q |
219 |
cttttatctaactgaagataaaggtgaacctgatgaggagaaaaactgaacaatatataaagtaattcattttctgttgaagttattttccaacgatttt |
318 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603328 |
cttttatataactgaagataaaggtgaacctgatgaggagaaacactgaacaatatataaagtaattcattttctgttgaagttattttccaacgatttt |
28603427 |
T |
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| Q |
319 |
ctcattttgcaacataactagctagttgat |
348 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28603428 |
ctcattttgcaacataactagctagttgat |
28603457 |
T |
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