View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_39 (Length: 337)
Name: NF18475_high_39
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_39 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 42788871 - 42789194
Alignment:
| Q |
14 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788871 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42788970 |
T |
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| Q |
114 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788971 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
42789070 |
T |
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| Q |
214 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42789071 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattctt |
42789170 |
T |
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| Q |
314 |
cggtctgttgttacaaccttatca |
337 |
Q |
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||| |||||||||||||||||||| |
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| T |
42789171 |
cgggctgttgttacaaccttatca |
42789194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 42798409 - 42798732
Alignment:
| Q |
14 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
113 |
Q |
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| T |
42798409 |
gaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaat |
42798508 |
T |
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| Q |
114 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
213 |
Q |
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| T |
42798509 |
tcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttccct |
42798608 |
T |
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| Q |
214 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42798609 |
attaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattctt |
42798708 |
T |
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| Q |
314 |
cggtctgttgttacaaccttatca |
337 |
Q |
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||| |||||||||||||||||||| |
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| T |
42798709 |
cgggctgttgttacaaccttatca |
42798732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 336
Target Start/End: Original strand, 34566633 - 34566866
Alignment:
| Q |
103 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttc |
202 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| | |
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| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
34566732 |
T |
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| Q |
203 |
aatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaac |
302 |
Q |
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|||||||| ||||| | || || || || ||||| || ||| ||||| | ||| || |||| || ||||||||||||||||| |||||||||| |
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| T |
34566733 |
aatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtttgtgaagatattaaggtaaaac |
34566832 |
T |
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| Q |
303 |
tcgacattcttcggtctgttgttacaaccttatc |
336 |
Q |
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||||||||||||| ||||||| ||||| ||||| |
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| T |
34566833 |
tcgacattcttcgtgctgttgtaacaactttatc |
34566866 |
T |
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