View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_40 (Length: 335)
Name: NF18475_high_40
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 34744323 - 34744629
Alignment:
| Q |
12 |
cacagattctcaattataaatgatagcaaaataacttgcttttcatgtattgagaggttaaacataagtggaactgcatgattttacctatattcattgg |
111 |
Q |
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| T |
34744323 |
cacagattctcaattataaatgatagcaaaataacttgcttttcatgtattgagaggttaaacataagtggaactgcatgattttacctatattcattgg |
34744422 |
T |
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| Q |
112 |
gataaaatggtgcaggtgcataaggagggtgtgcagatgagttaaagttatcatgaagtgcctttccataatcttcattattttcttccccccacctata |
211 |
Q |
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| T |
34744423 |
gataaaatggtgcaggtgcataaggagggtgtgcagatgagttaaagttatcatgaagtgcctttccataatcttcattattttcttccccccacctata |
34744522 |
T |
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| Q |
212 |
tccttgatgggctaatgcaaataaaagttcaatctttgatcagaaatttaattaactataccaagtgaacaaaaagcacnnnnnnnngaaaattaagtac |
311 |
Q |
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| T |
34744523 |
tccttgatgagctaatgcaaataaaagttcaatcttggatcagaaatttaattaactataccaagtgaacaaaaagcacttttttttgaaaattaagtac |
34744622 |
T |
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| Q |
312 |
caaccat |
318 |
Q |
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||||||| |
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| T |
34744623 |
caaccat |
34744629 |
T |
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