View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_46 (Length: 308)
Name: NF18475_high_46
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22450618 - 22450484
Alignment:
| Q |
18 |
gaacaaaggattaaaaaagaatttcagaagaaaattgtgagacctatggccataataattgctcggttgagagcagagaacaatcaattttttgttttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22450618 |
gaacaaaggattaaaaaagaatttcagaagaaaattgtgagacctatggccataataattgctcggttgagagcagagaacaatcaattttttgttttgt |
22450519 |
T |
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| Q |
118 |
ttaagagagaggtaaattaatgaacattgaggatt |
152 |
Q |
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| T |
22450518 |
ttaagagagaggtaaattaatgaacattgaggatt |
22450484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 35580293 - 35580260
Alignment:
| Q |
152 |
tgagtggtgttatttgaacaatcaaatgagacaa |
185 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
35580293 |
tgagtagtgttatttgaacaatcaaatgagacaa |
35580260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 6198631 - 6198501
Alignment:
| Q |
18 |
gaacaaaggattaaaaaagaatttcagaagaaaattgtgagacctatggccataataattgctcggttgagagcagagaacaatcaattttttgttttgt |
117 |
Q |
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||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | || | | |||||||||||||||||| ||||| |
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| T |
6198631 |
gaacaaaggattacaaaagaatttgagaagaaaattgttagacctatggccataataattgcttgattcaaataagagaacaatcaattttt--ttttgg |
6198534 |
T |
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| Q |
118 |
ttaagagagaggtaaattaatgaacattgagga |
150 |
Q |
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||| ||||||| ||| ||||| ||||||||||| |
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| T |
6198533 |
ttaggagagagataagttaataaacattgagga |
6198501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 1196219 - 1196185
Alignment:
| Q |
151 |
ttgagtggtgttatttgaacaatcaaatgagacaa |
185 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
1196219 |
ttgagtagtgttatttgaacaatcaaatgagacaa |
1196185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 37032991 - 37033023
Alignment:
| Q |
153 |
gagtggtgttatttgaacaatcaaatgagacaa |
185 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37032991 |
gagtagtgttatttgaacaatcaaatgagacaa |
37033023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 42996632 - 42996600
Alignment:
| Q |
153 |
gagtggtgttatttgaacaatcaaatgagacaa |
185 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
42996632 |
gagtagtgttatttgaacaatcaaatgagacaa |
42996600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 24551116 - 24551148
Alignment:
| Q |
153 |
gagtggtgttatttgaacaatcaaatgagacaa |
185 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24551116 |
gagtagtgttatttgaacaatcaaatgagacaa |
24551148 |
T |
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