View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_50 (Length: 270)
Name: NF18475_high_50
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 38859057 - 38858817
Alignment:
| Q |
19 |
agtatcacctcacatattatggtatgcaccttgatgttcagttgagtgttgtcttgctccaaattcattcaatcacttgaaggtgccttgtcaagttcta |
118 |
Q |
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| T |
38859057 |
agtatcacctcacatattatggtatgcaccttgatgttcagttgagtgttgtcttgctccaaattcattcaatcacttgaaggtgccttgtcaagttcta |
38858958 |
T |
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| Q |
119 |
catcaacattatcaatttgttgattactggtag-nnnnnnnnggtcatcaagattctaaggaataaggccattatctcaggttcctttcctttagatgtg |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38858957 |
catcaacattatcaatttgttgattactggtagtttttttttggtcatcaagattctaaggaataaggccattatctcaggttcctttcctttagatgtg |
38858858 |
T |
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| Q |
218 |
gaacctatgaaatccacaatgtttattcctttgttatgttc |
258 |
Q |
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| T |
38858857 |
gaacccatgaaatctacaatgtttattcctttgttatgttc |
38858817 |
T |
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