View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_58 (Length: 241)
Name: NF18475_high_58
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_58 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 5587361 - 5587583
Alignment:
| Q |
19 |
gagtcatgtatcttacgcccttgtattcaatggatcgattcccctgaagctcaaggtcatgccactgtctttgtagccaaatttttcggccgtgctgacc |
118 |
Q |
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| T |
5587361 |
gagtcatgtatcttacgcccttgtattcaatggatcgatacccctgaagctcaaggtcatgccactgtctttgtagccaaatttttcggccgtgctgacc |
5587460 |
T |
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| Q |
119 |
ttatgtctttcatttccaacgtccctctaccacaaagacctggtaaataatctttactttcattttttacactttcactctaagtagtttgagaatcacg |
218 |
Q |
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| T |
5587461 |
ttatgtctttcatttccaacgtccctctaccacaaagacctggtaaataatctttactttcattttttacactttcactctaagtagtttgagaatcacg |
5587560 |
T |
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| Q |
219 |
gtgatccacgagttttaactctt |
241 |
Q |
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| T |
5587561 |
gtgatccacgagttttaactctt |
5587583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 39872550 - 39872405
Alignment:
| Q |
19 |
gagtcatgtatcttacgcccttgtattcaatggatcgattcccctgaagctcaaggtcatgccactgtctttgtagccaaatttttcggccgtgctgacc |
118 |
Q |
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| T |
39872550 |
gagtcgtgtattttacgaccttgtttgcaatggatcgaaactccagaagctcaaggccacgctactgttttcgtagcaaaattctttggtcgggctggtc |
39872451 |
T |
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| Q |
119 |
ttatgtctttcatttccaacgtccctctaccacaaagacctggtaa |
164 |
Q |
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| T |
39872450 |
tcatgtccttcatttccaacgtccctgaaccacagagaccaggtaa |
39872405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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