View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_60 (Length: 239)
Name: NF18475_high_60
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_60 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 29677181 - 29676958
Alignment:
| Q |
16 |
aaaaggatagtaagttaagaacaagagttttattgatgtagaagtttgttgtatctttacaagtatttaccatgcaggaaggttaacttttcaacttttt |
115 |
Q |
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| T |
29677181 |
aaaaggatagtgagttaagaacaagaattttattgatgtagaagtttgttgcatctttacaagtatttgccatgcagaaaggttaacttttcaacttttt |
29677082 |
T |
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| Q |
116 |
tgcaatttcagcaatgtatttaccctggtaaaaggcctgctgaagctctagctccgtaggttgacgagttccatctccagcgaaagttccagcgccatac |
215 |
Q |
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| T |
29677081 |
tgcaatttcagcaatgtatttaccctggtaaaaggcctgctgaagctctagctccgtaggttgacgagttccatctccagcgaaagttccagcgccatac |
29676982 |
T |
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| Q |
216 |
gccgagcctccttttacctcatcc |
239 |
Q |
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| T |
29676981 |
gccgagcctccttttacctcatcc |
29676958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 29698263 - 29698129
Alignment:
| Q |
103 |
ttttcaacttttttgcaatttcagcaatgtatttaccctggtaaaaggcctgctgaagctctagctccgtaggttgacgagttccatctccagcgaaagt |
202 |
Q |
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| T |
29698263 |
ttttcaacttatttgctatttgagcaaataatttaccctggtaaaaggcctgctgaagctctagctaagtaggttgacgagttccgtctcctgccaaagt |
29698164 |
T |
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| Q |
203 |
tccagcgccatacgccgagcctccttttacctcat |
237 |
Q |
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| T |
29698163 |
tccagcgccttaggccaagcctcctttaacctcat |
29698129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 29690094 - 29689956
Alignment:
| Q |
102 |
cttttcaacttttttgcaatttcagcaatgtatttaccctggtaaaaggcctgctgaagctctagctccgtaggttgacgagttcc-atctccagcgaaa |
200 |
Q |
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| T |
29690094 |
cttttcaactttcttgcaatttcaacaatgtatttagcctggtaaaatgcgctctgaagctctagctcagtaagctgacgagttccggtctcctgcctaa |
29689995 |
T |
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| Q |
201 |
gttccagcgccatacgccgagcctccttttacctcatcc |
239 |
Q |
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| T |
29689994 |
gttccagcaccttaggccaagcctcatttaacatcatcc |
29689956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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