View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_high_70 (Length: 223)
Name: NF18475_high_70
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_high_70 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 776741 - 776651
Alignment:
| Q |
50 |
aagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacatt |
140 |
Q |
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| T |
776741 |
aagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcagagcatacatt |
776651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 817963 - 817869
Alignment:
| Q |
50 |
aagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacattatta |
144 |
Q |
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| T |
817963 |
aagtgatcacctcatgaaaggcaagtccaaagcatatataaaagcatggtcatgtagtagagccaatgagcaaattatcaaagcatacattatta |
817869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 8458607 - 8458751
Alignment:
| Q |
50 |
aagtgatcccctcatgaaaggcaagtgcaaagcatatataaaagcatggtcatgtagtagagccaatgagcaagttatcaaagcatacattattatatta |
149 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
8458607 |
aagtgatcccctcatgaaaggcaagtccaaagcatatataaaagcatgtgcatgtagtagggccaatgagcaagttatcaaagcacatattattatattt |
8458706 |
T |
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| Q |
150 |
gcaacnnnnnnnnnnnntacattgttaattatgcgtattaaatca |
194 |
Q |
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| T |
8458707 |
gcaacaaaaagaaagcatacattgttaattatgcgtattaaatca |
8458751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 776596 - 776553
Alignment:
| Q |
167 |
tacattgttaattatgcgtattaaatcaatgaaccctcttgtgg |
210 |
Q |
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| T |
776596 |
tacattattaattatgcgtattaaatcaatgaaccctcttgtgg |
776553 |
T |
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