View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_1 (Length: 920)
Name: NF18475_low_1
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_1 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 785; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 12 - 905
Target Start/End: Complemental strand, 231132 - 230239
Alignment:
| Q |
12 |
tagattatacttcttctgtgttggtctacaaagatcagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaactta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
231132 |
tagattatacttcttctgtgttggtctacaaatatcagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaactta |
231033 |
T |
|
| Q |
112 |
gcatctctctcgttttcatatctatcagattttaattcgtgtagttcatttactaaatcaccaannnnnnncttcaagttatgatattctcgcttgaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
231032 |
gcatctctctcgttttcatatctatcagattttaattcgtgtagttcatttactacatcaccaatttttttcttcaagttatgatattctcgcttgaaat |
230933 |
T |
|
| Q |
212 |
cactttgcttttcctgcaacagacacagctctctcttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
230932 |
cactttgcttttcctgcaacagacacagctctctcttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttc |
230833 |
T |
|
| Q |
312 |
ctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactatcagcacgttgctgcccatcaagaagt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
230832 |
ctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactatcaccacgttgctgcccatcaagaagt |
230733 |
T |
|
| Q |
412 |
tcttttctctctctaagatttgaagtttttatcctaacttcctcttttattctactatattcttccaagtcactgccatctaacttaatctgaccaccaa |
511 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
230732 |
tcttttttctctctaagatttgcagtttttatcctaacttcctcttttattctactatattcttccaagtcattgccatctaacttaatctgaccaccaa |
230633 |
T |
|
| Q |
512 |
catttcgacccttttcctgtaggtcatccattttcgccttaagatcacgaatacttctctgtagaactgctatatcattagcatgcctctttcgttcttc |
611 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| || | ||||||||||||||||||||||||||||||||| |
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|
| T |
230632 |
catttcgacccttttcctgtaggtcatcctttttcgcctcaagatcccagatacttctctttaacattgctatatcattagcatgcctctttcgttcttc |
230533 |
T |
|
| Q |
612 |
accttttttgcatagctccttcttcgccttttcaattttcaaattgatacgagatatttcctcctttaacttgataacatcgggtcgagtcttgtcatca |
711 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
230532 |
accttttttgcagagctccttcttcaccttttcaattttcaaattgatacgagatattttctcctttaacttgataacatcgggtcgagtcttgtcatca |
230433 |
T |
|
| Q |
712 |
agtttgttgcttatctcagttattttctcctcaagtagcttaatctcttcaacacaattggctagctctttttccttttcattggcttcatgttcaaatt |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
230432 |
agtttgttgcttatctcagttattttctcctcaagtagcttaatctcttcaacacaattggctagctctttttccttttcattggcttcatgttcaaatt |
230333 |
T |
|
| Q |
812 |
tttctacctcattaccaacaccttcacgccttgttttatcaacttcaagttcctcggtggttttagcaaaatcattctctatattgaacaactt |
905 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
230332 |
tttctacctctttaccaacaccttcacaacttgttttatcaacttcaagttcctcagtggttttagcaaaatcattctctatattgaacaactt |
230239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 286 - 459
Target Start/End: Complemental strand, 30584871 - 30584698
Alignment:
| Q |
286 |
tcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactat |
385 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
30584871 |
tcaagcctttctcgcatctgcttttcctgtgaatccagctcagcctcccggttttttaattgttgaagattttcttccaaattattttgagcttcactat |
30584772 |
T |
|
| Q |
386 |
cagcacgttgctgcccatcaagaagttcttttctctctctaagatttgaagtttttatcctaacttcctctttt |
459 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| ||||||||| |||| ||||| |||| | ||||||||||| |
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|
| T |
30584771 |
cagcatgttgctgcctatctagaagttctttttcctctctaagctttgcggttttcatcccagcttcctctttt |
30584698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 25834042 - 25833895
Alignment:
| Q |
286 |
tcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactat |
385 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| | |||| |||||||||||||||||||| ||||||||||||| ||| | ||||||||| |
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|
| T |
25834042 |
tcaagcctttctcgcatctgcttttcctgtgaatccagctcagtctcctggttttttaattgttgaagattttcttccaaattgttttcaacttcactat |
25833943 |
T |
|
| Q |
386 |
cagcacgttgctgcccatcaagaagttcttttctctctctaagatttg |
433 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| ||||||||| |||| |
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|
| T |
25833942 |
cagcatgttgctgcctatctagaagttctttttcctctctaagctttg |
25833895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 30585272 - 30585157
Alignment:
| Q |
16 |
ttatacttcttctgtgttggtctacaaagatcagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcat |
115 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | || || ||||||| |
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|
| T |
30585272 |
ttatacttcttctgtgtaggcctacaaagatcagtcatgcgaccatggactccttgaaacaagcgtttcagagttgccacagcctgagacaatttagcat |
30585173 |
T |
|
| Q |
116 |
ctctctcgttttcata |
131 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
30585172 |
ctctctcgttttcata |
30585157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 25834450 - 25834331
Alignment:
| Q |
20 |
acttcttctgtgttggtctacaaagatcagtcatgcgaccatggactccttgaaacaagcgttttagagtcgccacagtatcagcaaacttagcatctct |
119 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| | || || ||||||||||| |
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|
| T |
25834450 |
acttcttctgagttggccaacaaagatcagtcatgcgaccatggactccctgaaacaagcgtttcagagttgccacagcctgagacaatttagcatctct |
25834351 |
T |
|
| Q |
120 |
ctcgttttcatatctatcag |
139 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
25834350 |
ctcgttttcatatctatcag |
25834331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 769 - 904
Target Start/End: Complemental strand, 30583135 - 30583000
Alignment:
| Q |
769 |
ttggctagctctttttccttttcattggcttcatgttcaaatttttctacctcattaccaacaccttcacgccttgttttatcaacttcaagttcctcgg |
868 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||||| ||||||| || ||| |||||||||||| ||| |||||||| ||||||||||||||| |
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|
| T |
30583135 |
ttggcttgctcttttttctttttgccggcttcatgttcaaaattttctaattctttaataacaccttcacggcttcttttatcagcttcaagttcctcgg |
30583036 |
T |
|
| Q |
869 |
tggttttagcaaaatcattctctatattgaacaact |
904 |
Q |
| |
|
| |||||| ||| |||||| |||||||||||||||| |
|
|
| T |
30583035 |
ttgttttaacaacatcattttctatattgaacaact |
30583000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 683
Target Start/End: Complemental strand, 30583753 - 30583558
Alignment:
| Q |
488 |
catctaacttaatctgaccaccaacatttcgacccttttcctgtaggtcatccattttcgccttaagatcacgaatacttctctgtagaactgctatatc |
587 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||| | |||||| | ||||||| | ||||||| ||||| |||||||| |||||||||| |
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|
| T |
30583753 |
catctaactgaatctgatcgccaacatttcgacccttttcatttaggtctttcattttccctgtaagatcctcaataccactctgtaggtctgctatatc |
30583654 |
T |
|
| Q |
588 |
attagcatgcctctttcgttcttcaccttttttgcatagctccttcttcgccttttcaattttcaaattgatacgagatatttcctcctttaactt |
683 |
Q |
| |
|
|| || |||| |||| | ||||| | |||||||| ||||| |||||| | |||| |||||| | |||||||||| ||||||||||||||||| |
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|
| T |
30583653 |
tttggcgtgccccttttgctcttccctttttttgccaagctctttcttcccttttttaatttttgtactgatacgagacatttcctcctttaactt |
30583558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 468 - 683
Target Start/End: Complemental strand, 25833097 - 25832882
Alignment:
| Q |
468 |
atattcttccaagtcactgccatctaacttaatctgaccaccaacatttcgacccttttcctgtaggtcatccattttcgccttaagatcacgaatactt |
567 |
Q |
| |
|
|||||||| ||||||| | ||||||| | ||||||| |||||||||||||||||||||| |||||| | ||||||| | ||||||| ||||| |
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|
| T |
25833097 |
atattcttgcaagtcattatcatctaattgaatctgattgccaacatttcgacccttttcctttaggtctttcattttccctgtaagatcctcaatacca |
25832998 |
T |
|
| Q |
568 |
ctctgtagaactgctatatcattagcatgcctctttcgttcttcaccttttttgcatagctccttcttcgccttttcaattttcaaattgatacgagata |
667 |
Q |
| |
|
|||| |||| |||||||||| || || | || | || ||||||| | |||||| | ||||| |||| | | |||| |||||| | |||||||||| | |
|
|
| T |
25832997 |
ctctttagatctgctatatctttggcgttccccctttgttcttccctttttttcccaagctctttctgcccttttttaatttttgtactgatacgagaca |
25832898 |
T |
|
| Q |
668 |
tttcctcctttaactt |
683 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
25832897 |
tttcctcttttaactt |
25832882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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