View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_10 (Length: 612)
Name: NF18475_low_10
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 3 - 590
Target Start/End: Complemental strand, 20702355 - 20701756
Alignment:
| Q |
3 |
ttgaggaggagcagagaccaaatgttgatgttgtgaactggtctgataaggattattctgttgttactattgaatgtagggataggccgaagcttgtttt |
102 |
Q |
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| T |
20702355 |
ttgacgagaagcaaagaccaaatgttgatgttgtgaactggtctgataaggattattctgttgttactattgaatgtagggataggccgaagcttgtttt |
20702256 |
T |
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| Q |
103 |
cgacactgtttgtactttgacagatatgcaatatgtagtttttcatgctaatattgatgccgaggggccacaagcttatcaggtatatatcatatcacca |
202 |
Q |
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| T |
20702255 |
cgacactgtttgtactttgacagatatgcaatatgtagtttttcatgctaatattgatgccgaggggccacaagcttatcaggtatatatcatatcacca |
20702156 |
T |
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| Q |
203 |
ctttgatatttacaaataaacatggaagcagacttgagagattcctttggtttcttggtctatactttattggttttctaaggtgatttcattggttaat |
302 |
Q |
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| T |
20702155 |
ctttgatctttacaaataaacatggaagcagacttgagagattcctttggtttcttggtctatactttattggttttctaaggtgatttcattggttaat |
20702056 |
T |
|
| Q |
303 |
agtttatttcattgtgtatattgtaggaatattacatcaagcatatagatgggtcccctgtaaaatcagatgcagaaagacagagagtgatacattgtct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20702055 |
agtttatttcattgtgtatattgtaggaatattacatcaagcatatagatgggtcccctgtaaaatcagatgcagaaagacagagagtgatacattgtct |
20701956 |
T |
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| Q |
403 |
tgaagctgctattgagagaagagtttccgaggtgagggacttgatgttagtacttagcaata-ttcaattggcagtaaatttggcagaatcacagcgtga |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| | | |||| |
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| T |
20701955 |
tgaagctgctattgagagaagagtttccgaggtgagggacttgatgttagtacttagcgatatttcaattgccagtaaatttggcagaatcgcggtgtga |
20701856 |
T |
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| Q |
502 |
tgccgcgattttaacaaaagctacacttcagaacttcgtaaataatc-----------gtgattttgctagtctcattttcaaatctaagcatccactta |
590 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20701855 |
tgccgcgattttaacaaaagctacactttagaacttcgtaaataatcacaatgatattgtgattttgctagtctcattttcaaatctaggcatccactta |
20701756 |
T |
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