View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_12 (Length: 603)
Name: NF18475_low_12
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_12 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 49708700 - 49708112
Alignment:
| Q |
1 |
acatattctttgcgtccgctcttccggttattgctttcggagaacaacttagtagggatacagatggaagcttgagcaccgtagaaacattggcatctac |
100 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49708700 |
acatattttctgcgtccgctcttccggttattgctttcggagaacaacttagtagggatacagatggaagcttgagcactgtagaaacattggcatctac |
49708601 |
T |
|
| Q |
101 |
tgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgtacacttatctctacact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49708600 |
tgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgtacacttatctttacact |
49708501 |
T |
|
| Q |
201 |
ttctgcaaaaatacacctcaattgggtaccaagctctttctagcttgggctggttggtaagttattttttcataattgtgtaaatttctgtttaagggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708500 |
ttctgcaaaaatacacctcaattgggtaccaagctctttctagcttgggctggttggtaagttattttttcataattgtgtaaatttctgtttaagggtt |
49708401 |
T |
|
| Q |
301 |
tttacagttatataatcacaatatgtatcgaactaaaatgttcgtatttgtgttccagggtttgtgtttggacggcattgatgttaattttgcttgcaat |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708400 |
tttacagttatataatcacaatatgtatcgaactaaaatgttcgtatttgtgttccagggtttgtgtttggacggcattgatgttaattttgcttgcaat |
49708301 |
T |
|
| Q |
401 |
tttcaatgcttgcaatattatcactagatttacaagaattgcaggggagttatttggcatgctaatcactgttcttttctttcaagaggctataaaggtg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708300 |
tttcaatgcttgcaatattatcactagatttacaagaattgcaggggagttatttggcatgctaatcactgttcttttctttcaagaggctataaaggtg |
49708201 |
T |
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| Q |
501 |
ttgttgattgtttcctctttctagcaaaaataaaatacattgtgtatttaattggcaatcaacttaacaaaaattgtttgaaccacagg |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49708200 |
ttgttgattgtttcctctttctagcaaaaataaaatacattgtgtatttaattggcaatcaacttaacaaaagttgtttgaaccacagg |
49708112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 2233028 - 2233231
Alignment:
| Q |
59 |
tacagatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttagga |
158 |
Q |
| |
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||||| ||||| ||||||||| || ||||||||| |||| || || || ||||||||||| || ||||| | ||||| ||||||||||||||| ||||| |
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| T |
2233028 |
tacaggtggaatcttgagcacagttgaaacattgacatccacagctatatgtggaattatccactcaatatttggtggtcaacctttgttgattgtagga |
2233127 |
T |
|
| Q |
159 |
gttgcagaaccaactgttataatgtacacttatctctacactttctgcaaaaatacacctcaattgggtaccaagctctttctagcttgggctggttggt |
258 |
Q |
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|
|||| |||||||||||||| |||||||| ||| |||| ||| |||| ||| | ||| |||| ||| ||||||| ||| | |||||||||||||||| |
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| T |
2233128 |
attgctgaaccaactgttatcatgtacaccattctatacagtttttgcacaaaaagaccagaattaggtgccaagctgtttttggcttgggctggttggt |
2233227 |
T |
|
| Q |
259 |
aagt |
262 |
Q |
| |
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|||| |
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| T |
2233228 |
aagt |
2233231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 499
Target Start/End: Original strand, 2233435 - 2233583
Alignment:
| Q |
351 |
tgttccagggtttgtgtttggacggcattgatgttaattttgcttgcaattttcaatgcttgcaatattatcactagatttacaagaattgcaggggagt |
450 |
Q |
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|||| |||||||||||||||||| ||||| || | || ||||||||||||||||||| || ||||||||||| ||||| || |||||| ||| | |
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| T |
2233435 |
tgttgcagggtttgtgtttggacatcattgttgctgatgctgcttgcaattttcaatgcatgttcaattatcactaggtttactagggttgcagaggaat |
2233534 |
T |
|
| Q |
451 |
tatttggcatgctaatcactgttcttttctttcaagaggctataaaggt |
499 |
Q |
| |
|
|||||| |||| |||| |||||||||||| | ||| |||||||| |||| |
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| T |
2233535 |
tatttgccatgttaattactgttcttttcatgcaacaggctatagaggt |
2233583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2232051 - 2232101
Alignment:
| Q |
1 |
acatattctttgcgtccgctcttccggttattgctttcggagaacaactta |
51 |
Q |
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||||||||||||| || || ||||| ||||||||||| ||||||||||||| |
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| T |
2232051 |
acatattctttgcttctgcacttcctgttattgcttttggagaacaactta |
2232101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 45077927 - 45078029
Alignment:
| Q |
85 |
aaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
184 |
Q |
| |
|
|||| |||||||| ||| | || ||||| ||||| || ||||| || ||||| |||||||| ||||||||||||| |||||||| ||||| || ||||| |
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| T |
45077927 |
aaaccttggcatcaacttcaatatgtggcattatacactcaatcattggtggtcaacctttactgattttaggagtggcagaacctactgtgatcatgta |
45078026 |
T |
|
| Q |
185 |
cac |
187 |
Q |
| |
|
||| |
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| T |
45078027 |
cac |
45078029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 12306277 - 12306376
Alignment:
| Q |
85 |
aaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
184 |
Q |
| |
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||||||| ||||||||||| | ||||||||||| || || ||||| || ||||| ||||||||||| | || || |||||||||||||| || ||||| |
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| T |
12306277 |
aaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttgttgatacttggtgtagcagaaccaactgtaatcatgta |
12306376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 8557 - 8504
Alignment:
| Q |
62 |
agatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaat |
115 |
Q |
| |
|
|||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| |
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| T |
8557 |
agatggaagcttaagcactgtggaaacactggcttctacagccatttgtggaat |
8504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 8481 - 8428
Alignment:
| Q |
62 |
agatggaagcttgagcaccgtagaaacattggcatctactgccatttgtggaat |
115 |
Q |
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|||||||||||| ||||| || |||||| |||| ||||| |||||||||||||| |
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| T |
8481 |
agatggaagcttaagcactgtggaaacactggcttctacagccatttgtggaat |
8428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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