View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_13 (Length: 574)
Name: NF18475_low_13
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Complemental strand, 35702748 - 35702208
Alignment:
| Q |
16 |
atagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgaca |
115 |
Q |
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| T |
35702748 |
atagatccaacaaaaccgtaaacttcagaaggtttagggccatgatcagctgacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgaca |
35702649 |
T |
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| Q |
116 |
cagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttccattctgatccagggttgcaaatcattcaactt |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35702648 |
cagtcgccctccgctttcttgaaagactcagtgttcttcttggactgttgacagaccgaggactttccattctgatccagggttgcaaatcattcaactt |
35702549 |
T |
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| Q |
216 |
taattaataattataatcatata-ttctaaatttacaatgtacaacaaaaaattccatagaaatcaattaacaataacaacaatctccaattttgagaaa |
314 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35702548 |
taattaataattataatcatataattctaaatttacaatgtacaacaaaaaattccatagaaatcaattaacaataacaacaatctccaattttgagaaa |
35702449 |
T |
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| Q |
315 |
atcaacaacaa---ttctcaattttgaagattattacaaaatccccaaatcaaaaatttccaaaatcacaaaacattgattcattacctgtgtatgtggt |
411 |
Q |
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||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35702448 |
atcaacaacaacaattctcaattttaaagaatattacaaaatccccaaatcaaaaaattccaaaatcacaaaacattgattcattacctgtgtatgtggt |
35702349 |
T |
|
| Q |
412 |
ggtcggtggagagcgcggcggagagattccacaggcagaagcaaattcgcgcgcgaggaagaaaatgggaaatgcgacgcgcgagttcaatgtgaaaagc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35702348 |
ggtcggtggagagcgcggcggagagattccacaggcagaagcaaattcgcgcgcgaggaagaaaatgggaaatgcgacgcgcgagttcaaagtgaaaagt |
35702249 |
T |
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| Q |
512 |
gttaattgaaatgaagtgtacgttgattctgttttcacata |
552 |
Q |
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| T |
35702248 |
gttaattgaaatgaagtgtacgttgattctgttttcacata |
35702208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 7955628 - 7955461
Alignment:
| Q |
16 |
atagatccaacgaaaccgtaaacttcagaaggtttagggccatgatcagcagacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgaca |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
7955628 |
atagatccaacgaaaccgtaaacttcagaaggcttagggccatgatcccttgacaaaccagaggcagagttgtttttatcatcggaatcgagaaatgaca |
7955529 |
T |
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| Q |
116 |
cagttgccctccgctttcttgaaagactcagtgttcttcttggactgttcacagaccgaggactttcc |
183 |
Q |
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| T |
7955528 |
cagttgccctccgctttctcgatagactcagtgttcttcttggactgttgacagaccgaggactttcc |
7955461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 7955199 - 7955158
Alignment:
| Q |
284 |
aacaataacaacaatctccaattttgagaaaatcaacaacaa |
325 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||| |
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| T |
7955199 |
aacaataagaaaaatctccaattttgagcaaatcaacaacaa |
7955158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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