View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_14 (Length: 552)
Name: NF18475_low_14
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 242 - 535
Target Start/End: Complemental strand, 20910155 - 20909862
Alignment:
| Q |
242 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
341 |
Q |
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| T |
20910155 |
ggacgccgatagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
20910056 |
T |
|
| Q |
342 |
caaaaagcagaacgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatgctagg |
441 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20910055 |
caaaaagcagaatgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggaaaaaaagaagtgatgctagg |
20909956 |
T |
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| Q |
442 |
gtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
535 |
Q |
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| T |
20909955 |
gtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
20909862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 242 - 530
Target Start/End: Complemental strand, 20912898 - 20912609
Alignment:
| Q |
242 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
341 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20912898 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20912802 |
T |
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| Q |
342 |
caaaaagcagaacgcttgaacttgaagccatcttttgctata----actagaaagt-aaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
436 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||| |
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| T |
20912801 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20912702 |
T |
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| Q |
437 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
530 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
20912701 |
ctagggtttatatagcaaatgcc-aagggcaaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20912609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 242 - 530
Target Start/End: Complemental strand, 20921016 - 20920727
Alignment:
| Q |
242 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
341 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20921016 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20920920 |
T |
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| Q |
342 |
caaaaagcagaacgcttgaacttgaagccatcttttgctata----actagaaagt-aaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
436 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||| |
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| T |
20920919 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20920820 |
T |
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| Q |
437 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
530 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
20920819 |
ctagggtttatatagcaaatgcc-aagggcaaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20920727 |
T |
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