View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_low_15 (Length: 504)

Name: NF18475_low_15
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_low_15
NF18475_low_15
[»] chr7 (9 HSPs)
chr7 (18-395)||(4302841-4303219)
chr7 (273-395)||(11001101-11001223)
chr7 (298-383)||(1369529-1369614)
chr7 (295-395)||(8915448-8915547)
chr7 (275-395)||(1217487-1217605)
chr7 (329-392)||(1786420-1786483)
chr7 (273-395)||(13883010-13883133)
chr7 (295-392)||(11228432-11228528)
chr7 (276-389)||(27142353-27142462)
[»] chr2 (12 HSPs)
chr2 (18-395)||(35681639-35682016)
chr2 (180-395)||(31635882-31636097)
chr2 (18-188)||(31635528-31635698)
chr2 (299-390)||(280294-280385)
chr2 (326-395)||(27952652-27952721)
chr2 (273-395)||(33053109-33053230)
chr2 (333-393)||(2165624-2165684)
chr2 (273-394)||(32162243-32162363)
chr2 (296-395)||(22011095-22011194)
chr2 (337-394)||(23457389-23457446)
chr2 (295-371)||(18945663-18945739)
chr2 (295-395)||(36648585-36648685)
[»] chr8 (7 HSPs)
chr8 (18-340)||(37192739-37193063)
chr8 (298-395)||(23573249-23573346)
chr8 (267-395)||(2688855-2688981)
chr8 (333-395)||(22922177-22922239)
chr8 (322-393)||(22512377-22512448)
chr8 (337-395)||(26377776-26377834)
chr8 (295-389)||(24577811-24577905)
[»] chr1 (8 HSPs)
chr1 (295-392)||(10926906-10927003)
chr1 (273-387)||(13441924-13442036)
chr1 (273-395)||(23988913-23989035)
chr1 (327-392)||(8966030-8966095)
chr1 (295-395)||(10927814-10927914)
chr1 (297-392)||(40805571-40805666)
chr1 (295-380)||(31915247-31915332)
chr1 (327-395)||(31522576-31522644)
[»] chr6 (14 HSPs)
chr6 (274-395)||(18203126-18203246)
chr6 (272-395)||(22873499-22873622)
chr6 (295-395)||(34374062-34374162)
chr6 (295-395)||(22888965-22889065)
chr6 (275-395)||(12881715-12881834)
chr6 (295-395)||(22910508-22910608)
chr6 (333-395)||(3541947-3542009)
chr6 (333-395)||(30049617-30049679)
chr6 (333-395)||(30051904-30051966)
chr6 (295-395)||(12778684-12778782)
chr6 (334-384)||(18720019-18720069)
chr6 (335-395)||(32361109-32361169)
chr6 (332-387)||(8047663-8047718)
chr6 (365-393)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (273-387)||(21845225-21845335)
chr5 (274-395)||(18252109-18252230)
chr5 (333-388)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (295-387)||(22716324-22716416)
chr4 (295-387)||(22988801-22988893)
chr4 (299-395)||(6659656-6659751)
chr4 (295-395)||(10494634-10494734)
chr4 (295-393)||(7635000-7635098)
chr4 (333-395)||(13085421-13085483)
chr4 (317-387)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (273-393)||(49002-49122)
scaffold0054 (295-395)||(10361-10461)
scaffold0054 (273-393)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (273-394)||(365879-365999)
chr3 (273-395)||(8536658-8536780)
chr3 (345-395)||(3064066-3064116)
chr3 (297-379)||(2473000-2473084)
chr3 (347-392)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (333-395)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (295-395)||(145444-145544)
scaffold0024 (295-395)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 4302841 - 4303219
Alignment:
Q  18 actctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaact 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4302841 actctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaact 4302940  T
Q  117 gtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4302941 gtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattg 4303040  T
Q  217 ttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303041 ttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcg 4303140  T
Q  317 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303141 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 4303219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 11001223 - 11001101
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||| || || ||  ||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  11001223 caatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagagg 11001124  T
Q  373 tggaggagactgatgtaggaggg 395  Q
    |||||||||||||||||||||||    
T  11001123 tggaggagactgatgtaggaggg 11001101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 1369529 - 1369614
Alignment:
Q  298 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagact 383  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 8915547 - 8915448
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||| ||||| || |||||||||||| ||||||||||||||||||||||    
T  8915547 ctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagg 8915449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 395
Target Start/End: Complemental strand, 1217605 - 1217487
Alignment:
Q  275 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 374  Q
    ||||||||| || |||||  |||||||| |||||||||  |||||||||||  || ||||||||||||| | ||||||||| |||||||||||| |||||    
T  1217605 atgggatccaggagggtggtctcttgttaattggaggacacgacatgcatga-aatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtg 1217508  T
Q  375 gaggagactgatgtaggaggg 395  Q
    ||||||||||||| |||||||    
T  1217507 gaggagactgatgcaggaggg 1217487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 1786420 - 1786483
Alignment:
Q  329 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  1786420 agctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtagga 1786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 13883133 - 13883010
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacat--gcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcaga 370  Q
    ||||||||||| || |||||  |||||||| |||||||||| | ||||  ||||| ||| |||||||| | |||||||||||||| |||||||||| |||    
T  13883133 caatgggatccaggagggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttaga 13883035  T
Q  371 ggtggaggagactgatgtaggaggg 395  Q
    |||||| |||||||||| |||||||    
T  13883034 ggtggacgagactgatgcaggaggg 13883010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 11228432 - 11228528
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    ||||||||||||  |||||||  ||||||||||||| ||||||| | ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||    
T  11228432 ctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 27142353 - 27142462
Alignment:
Q  276 tgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctc-tttatcaaaatgagaactcgggatcgagttcttcagaggtg 374  Q
    |||||| ||||||||||| ||  ||||||||||| ||| | |||||||| |||||||| ||||||| ||| |||||| ||| |||| ||||||    ||     
T  27142353 tgggattcgggtgggtgttcttctgttcattggaagagccaacatgcat-ggaagctcttttatcataataagaacttggggtcgatttcttc----gta 27142447  T
Q  375 gaggagactgatgta 389  Q
    |||||||||||||||    
T  27142448 gaggagactgatgta 27142462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 35681639 - 35682016
Alignment:
Q  18 actctcaccatttggtgttctgc---atgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtca 113  Q
    |||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||      
T  35681639 actctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgttt 35681738  T
Q  114 actgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgcta 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  35681739 actgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctgcta 35681838  T
Q  214 ttgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggag 313  Q
    |||||||||| |||| ||||| | ||| |||||||||||| ||||  ||||  ||||||||||||||||| |||||     ||||||||||||| |||||    
T  35681839 ttgttggtaccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggt----ctcttgttcattgaaggag 35681934  T
Q  314 tcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    || |||||||| | ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  35681935 tcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggaggg 35682016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 180 - 395
Target Start/End: Original strand, 31635882 - 31636097
Alignment:
Q  180 ctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatggg 279  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  31635882 ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg 31635981  T
Q  280 atccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggagga 379  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  31635982 atccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggagga 31636081  T
Q  380 gactgatgtaggaggg 395  Q
    ||||||||||||||||    
T  31636082 gactgatgtaggaggg 31636097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 31635528 - 31635698
Alignment:
Q  18 actctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaact 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  31635528 actctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-t 31635626  T
Q  117 gtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttat 188  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31635627 gtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat 31635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 280385 - 280294
Alignment:
Q  299 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 390  Q
    |||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtag 280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 27952721 - 27952652
Alignment:
Q  326 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 27952652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 33053109 - 33053230
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||| | || |||||  |||||||| ||| |||||||||||||| ||| |||||||||||| | ||| ||||| |||| ||||||||||||||||    
T  33053109 caatgggattcaggagggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagagg 33053207  T
Q  373 tggaggagactgatgtaggaggg 395  Q
    |||||||||||||||||| ||||    
T  33053208 tggaggagactgatgtagaaggg 33053230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 2165624 - 2165684
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 393  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 2165684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 32162363 - 32162243
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||  || |||||  |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||  | | ||||| |||||||     
T  32162363 caatgggatcaaggagggtggtctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagaga 32162265  T
Q  373 tggaggagactgatgtaggagg 394  Q
    ||||||||||| ||||| ||||    
T  32162264 tggaggagactaatgtaagagg 32162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 296 - 395
Target Start/End: Original strand, 22011095 - 22011194
Alignment:
Q  296 tcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||||||||| | ||||||| |||| |||| |||  ||||||| | ||||||||||| || |||||||||| |||||||||||||| ||||| |||||||    
T  22011095 tcttgttcatcgaaggagtcaacatacatgagaaattctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggaggg 22011194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 23457389 - 23457446
Alignment:
Q  337 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    |||| ||||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggagg 23457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 18945663 - 18945739
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 371  Q
    ||||||||||||| ||||||  ||||| ||| ||| ||||| |||| |||||||| ||||||||||||| |||||||    
T  18945663 ctcttgttcattgcaggagttaacatgaatgagaaactcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 36648585 - 36648685
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 393  Q
    ||||| ||||||||| |||||  ||||||||| |||| |||| |||| ||  |||||| ||  |||||||||||| || ||||||||||| |||||||||    
T  36648585 ctcttattcattggaagagtcatcatgcatgg-aagcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggag 36648683  T
Q  394 gg 395  Q
    ||    
T  36648684 gg 36648685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 37192739 - 37193063
Alignment:
Q  18 actctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaact 116  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |    |||    
T  37192739 actctcaccatttgatgttctgcatgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttact 37192838  T
Q  117 gtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattg 216  Q
    ||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| ||||||| ||| |||||||||||||||||  ||||| ||||    
T  37192839 gtgttggtttcattcattcctatacttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctgcaattg 37192938  T
Q  217 ttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttg-ttcattggaggagtc 315  Q
    |||||||||||| ||||| | ||| |||||||||||| ||||| ||||||||||  ||||||||||| || || ||| |||||| ||  |||||||||||    
T  37192939 ttggtacattgctcagtggctgctttgtccataaaaagggaccctcacagttcactcaatgggatccaggaggatgttctcttgtttttttggaggagtc 37193038  T
Q  316 gacatgcatgggaagctctttatca 340  Q
     ||||||||||  ||||||| ||||    
T  37193039 aacatgcatggagagctcttcatca 37193063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 23573249 - 23573346
Alignment:
Q  298 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  23573249 ttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg 23573346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 395
Target Start/End: Original strand, 2688855 - 2688981
Alignment:
Q  267 ttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttctt 366  Q
    |||| ||||||||||||  | |||||  ||| ||||||||||||||||| ||||||||||||| ||||  || | |||||||||||| ||||||||||||    
T  2688855 ttcacccaatgggatccatgagggtgatctcatgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttctt 2688952  T
Q  367 cagaggtggaggagactgatgtaggaggg 395  Q
    || |||||||||||||| |||||||||||    
T  2688953 cataggtggaggagactcatgtaggaggg 2688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 22922239 - 22922177
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 22922177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 22512448 - 22512377
Alignment:
Q  322 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 393  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22512448 catgggaagcttcttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggag 22512377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 26377776 - 26377834
Alignment:
Q  337 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggaggg 26377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 24577905 - 24577811
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 389  Q
    |||||||| |||||||||||  | ||||| | |||| ||| ||||| || ||||||||  | |||| ||||||||| ||||||||||||||||||    
T  24577905 ctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatgta 24577811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 10926906 - 10927003
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10926906 ctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagga 10927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 13442036 - 13441924
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||| || || ||  |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||   |||||| |||||||||||    
T  13442036 caatgggatccaggaggatgatctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaact--tgatcgaattcttcagagg 13441939  T
Q  373 tggaggagactgatg 387  Q
    |||||||||||||||    
T  13441938 tggaggagactgatg 13441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 23988913 - 23989035
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||| |  |||||  |||||| |||||| ||||||  ||||||| ||||||||||||| ||||| ||||||||  | ||||||||||||||||    
T  23988913 caatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagagg 23989012  T
Q  373 tggaggagactgatgtaggaggg 395  Q
    || |||||||| |||||||||||    
T  23989013 tgtaggagactaatgtaggaggg 23989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 8966095 - 8966030
Alignment:
Q  327 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8966095 gaagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 10927814 - 10927914
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    |||||||| |||| | ||||| || |||||| ||| |||||||| | |||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  10927814 ctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagg 10927913  T
Q  395 g 395  Q
    |    
T  10927914 g 10927914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 40805571 - 40805666
Alignment:
Q  297 cttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    ||||||||| |||||||||  |||||||| ||| ||| |||||| ||  |||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtagga 40805666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 31915247 - 31915332
Alignment:
Q  295 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag 380  Q
    ||||||||||||||||||||| ||| || |||| || ||||| || | || ||||||||||| | ||||||||||||||||||||||    
T  31915247 ctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggag 31915332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 31522576 - 31522644
Alignment:
Q  327 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||| |||||| || |||||||||   |||||||||||||||||||| | | ||||||||||||||    
T  31522576 gaagctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggaggg 31522644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 274 - 395
Target Start/End: Original strand, 18203126 - 18203246
Alignment:
Q  274 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 373  Q
    |||||||||  || |||||  |||||||||||| |||||||| |||||||||| || |||||||| |||||||||||||||| |||||||||||||||||    
T  18203126 aatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggt 18203224  T
Q  374 ggaggagactgatgtaggaggg 395  Q
    ||||||||||||||||||||||    
T  18203225 ggaggagactgatgtaggaggg 18203246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 22873499 - 22873622
Alignment:
Q  272 ccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 371  Q
    |||||||||||| || ||||   ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||    
T  22873499 ccaatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagag 22873598  T
Q  372 gtggaggagactgatgtaggaggg 395  Q
    ||||| ||||||||||||||||||    
T  22873599 gtggatgagactgatgtaggaggg 22873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 34374162 - 34374062
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||| ||||    
T  34374162 ctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagg 34374063  T
Q  395 g 395  Q
    |    
T  34374062 g 34374062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 22888965 - 22889065
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22888965 ctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22889064  T
Q  395 g 395  Q
    |    
T  22889065 g 22889065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 12881715 - 12881834
Alignment:
Q  275 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 374  Q
    ||||||||| || |||||  ||||||||||||| || |||| |||||||||||||| |||| |||  ||||||| |||||| |||||||||||  |||||    
T  12881715 atgggatccaggagggtggtctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtg 12881813  T
Q  375 gaggagactgatgtaggaggg 395  Q
    |||||||||||||||||||||    
T  12881814 gaggagactgatgtaggaggg 12881834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 22910508 - 22910608
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22910508 ctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22910607  T
Q  395 g 395  Q
    |    
T  22910608 g 22910608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 3541947 - 3542009
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 3542009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 30049617 - 30049679
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30049679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 30051904 - 30051966
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 12778782 - 12778684
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||||||||||||| |||||||  |||| ||||  |||| |||||||| | ||| || |||||||||||||||||||||||||||||| ||||    
T  12778782 ctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagg 12778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  334 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactg 384  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 32361109 - 32361169
Alignment:
Q  335 ttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    |||||| |||||||||||| | ||||||| || |||||||||| ||||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggaggg 32361169  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 8047718 - 8047663
Alignment:
Q  332 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 387  Q
    ||||||| | ||| |||||||||| || ||||||||||||||||||||||| ||||    
T  8047718 tctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 11194398 - 11194426
Alignment:
Q  365 ttcagaggtggaggagactgatgtaggag 393  Q
    |||||||||||||||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggag 11194426  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 21845335 - 21845225
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||||||||| |    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  21845335 caatgggatccgggtggtt----tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagagg 21845240  T
Q  373 tggaggagactgatg 387  Q
    ||||  |||||||||    
T  21845239 tggaacagactgatg 21845225  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 395
Target Start/End: Original strand, 18252109 - 18252230
Alignment:
Q  274 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 373  Q
    |||||||| | || |||||  ||||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||||||||| || ||||||||||||||    
T  18252109 aatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggt 18252208  T
Q  374 ggaggagactgatgtaggaggg 395  Q
     |||||| |||||| |||||||    
T  18252209 agaggaggctgatgcaggaggg 18252230  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgt 388  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

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Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 22716324 - 22716416
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 387  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22716324 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 22988893 - 22988801
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 387  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22988893 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 395
Target Start/End: Complemental strand, 6659751 - 6659656
Alignment:
Q  299 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||| ||||||||||| | || |||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  6659751 tgttctttggaggagtcaatattcatgggaagctctttatcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggaggg 6659656  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 10494634 - 10494734
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||| | | |||||||||||||| || ||| ||||||||||| ||||    
T  10494634 ctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagg 10494733  T
Q  395 g 395  Q
    |    
T  10494734 g 10494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 7635000 - 7635098
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 393  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| ||||||||||||||| |||||||||||||||| ||||    
T  7635000 ctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggag 7635098  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 13085483 - 13085421
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggaggg 13085421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 9260297 - 9260367
Alignment:
Q  317 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 387  Q
    |||| |||| |||| ||||||||||||| |||||||||| |||||||||| ||| || ||||||| |||||    
T  9260297 acatccatgagaagttctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

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Target: scaffold0054 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 273 - 393
Target Start/End: Original strand, 49002 - 49122
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 371  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||| ||| ||||| |||| ||| |||||||||| | |||||||||||||    
T  49002 caatgggatccgggtgggtgttctcgtgttcataggaagagtcaacatgcatgg-aagttcttttatcagaataagaactcggggttgagttcttcagag 49100  T
Q  372 gtggaggagactgatgtaggag 393  Q
    ||||||||||||||||||||||    
T  49101 gtggaggagactgatgtaggag 49122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 10361 - 10461
Alignment:
Q  295 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 394  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  10361 ctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 10460  T
Q  395 g 395  Q
    |    
T  10461 g 10461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 393
Target Start/End: Original strand, 37404 - 37523
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 371  Q
    ||||||||||||| |||| || |||  |||||| ||| ||||| |||||||||| ||||||||| |||| ||| |||| | ||| |||||||||||||||    
T  37404 caatgggatccggttgggcgttctccggttcataggaagagtcaacatgcatgg-aagctcttttatcagaataagaatttggg-tcgagttcttcagag 37501  T
Q  372 gtggaggagactgatgtaggag 393  Q
    ||||||||||||||||||||||    
T  37502 gtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 365999 - 365879
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||| || |||||  ||| ||||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||||    
T  365999 caatgggatcccggagggtggtctcctgttcattggaagagtcaacatacatgg-aagctctttatcaaaacgagaactcgaggtcgagttcttcagagg 365901  T
Q  373 tggaggagactgatgtaggagg 394  Q
    ||||||||| ||||| ||||||    
T  365900 tggaggagattgatgcaggagg 365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 8536780 - 8536658
Alignment:
Q  273 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 372  Q
    ||||||||||| || |||||  ||||||||||||||| ||||| ||||  ||| ||| || ||||||| ||| |||||||||  |||||||||| |||||    
T  8536780 caatgggatccaggagggtgatctcttgttcattggaagagtcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagagg 8536681  T
Q  373 tggaggagactgatgtaggaggg 395  Q
    |||| ||| ||||||||||||||    
T  8536680 tggaagaggctgatgtaggaggg 8536658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 3064116 - 3064066
Alignment:
Q  345 gagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 3064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 2473084 - 2473000
Alignment:
Q  297 cttgttcattggaggagtcgacatgcatgggaagctcttt--atcaaaatgagaactcgggatcgagttcttcagaggtggagga 379  Q
    |||||||||||||| |||| ||||||||| |||| | |||  |||| |||||||||||||| |||||||||| | | ||||||||    
T  2473084 cttgttcattggagaagtcaacatgcatgagaagttttttttatcagaatgagaactcggggtcgagttctttaaaagtggagga 2473000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  347 gaactcgggatcgagttcttcagaggtggaggagactgatgtagga 392  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 46005 - 45943
Alignment:
Q  333 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 395  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 45943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 145444 - 145544
Alignment:
Q  295 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 393  Q
    ||||||||||||| ||||||| ||| || | ||  | |||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||    
T  145444 ctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggag 145542  T
Q  394 gg 395  Q
    ||    
T  145543 gg 145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 144282 - 144179
Alignment:
Q  295 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag---actgatgtag 390  Q
    ||||||||||| | ||||||||||| || ||||  | |||||||||| ||| |||||||||| || |||||||||||| ||||||||   ||||||| ||    
T  144282 ctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcag 144184  T
Q  391 gaggg 395  Q
    |||||    
T  144183 gaggg 144179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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